View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17734_low_29 (Length: 278)
Name: NF17734_low_29
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17734_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 56313499 - 56313744
Alignment:
| Q |
16 |
caagaataagcagcaaaatgaaaaaatattgggaatgggatttgttgttggacaatcaccaaagacaattgatgatcacatagttaacaaaatggaagga |
115 |
Q |
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| T |
56313499 |
caagaataagcagcaaaatgaaa---tattgggaatgggatttgttgttggacaatcaccaaagacaattgatgatcacatagttaacaaaatggaagga |
56313595 |
T |
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| Q |
116 |
agcagtagcggcggtaattcagatcatgtcacaacaactcttgggctttccaagtatagcaatactcctcctcctactaattaccgttcagaagaggaag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
56313596 |
agcagtagcggcggtaattcagatcatgtcacaacaactcttgggctttccaagtatagcaatactcctcctcctactaattaccgttcagaagaagaag |
56313695 |
T |
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| Q |
216 |
aaggattgatgatgat---gcagcagcagcatcaacctaggcacctagt |
261 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
56313696 |
aaggattgatgattatgcagcagcagcagcatcaacctaggcacctagt |
56313744 |
T |
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