View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17734_low_31 (Length: 274)
Name: NF17734_low_31
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17734_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 44555559 - 44555306
Alignment:
| Q |
1 |
gataagaaaattggttgtaaacgtgcaatggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggattcatgattgaaatat |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44555559 |
gataagaaaattggctgtaaacgtgcaatggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggatttatgattgaaatat |
44555460 |
T |
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| Q |
101 |
gcaattgtgatagtcttcctgttattcccttagctggtgaaatggttagatcatgctctagactcaaccttgagattatgccacaacagatacatcaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44555459 |
gcaattgtgatagtcttcctgttattcccttagctggtgaaatggttagatcatgctctagactcaaccttgagattatgccacaacagatacaccaagt |
44555360 |
T |
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| Q |
201 |
tgtaaagcaaatttgatcatgatgaggccaagcttcttattttatcttaatttt |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44555359 |
tgtaaagcaaatttgatcatgatgaggccaagcttcttattttatcttaatttt |
44555306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 44544917 - 44544664
Alignment:
| Q |
1 |
gataagaaaattggttgtaaacgtgcaatggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggattcatgattgaaatat |
100 |
Q |
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||||| ||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44544917 |
gataaaaaaattgtttgtaagcgtgcattggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggatttatgattgaaatat |
44544818 |
T |
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| Q |
101 |
gcaattgtgatagtcttcctgttattcccttagctggtgaaatggttagatcatgctctagactcaaccttgagattatgccacaacagatacatcaagt |
200 |
Q |
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| T |
44544817 |
gcaattgtgatagtctcccagttattcctctagctggtgagattgttaattcatgctctagaatcaaccttgagactatgccacaaaagatacaccaacc |
44544718 |
T |
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| Q |
201 |
tgtaaagcaaatttgatcatgatgaggccaagcttcttattttatcttaatttt |
254 |
Q |
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| T |
44544717 |
tgtagaaaaaatttaaacatgatgaggccaaacttcttattttatcttaatttt |
44544664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 375982 - 376047
Alignment:
| Q |
42 |
tggaattcaagtggatcaattgttttttcatgacccagatggattcatgattgaaatatgcaattg |
107 |
Q |
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||||||| | || ||||||||||| |||||||| |||||||||| ||||||||||| |||||||| |
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| T |
375982 |
tggaattaaggttgatcaattgttctttcatgatccagatggatatatgattgaaatgtgcaattg |
376047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 51845930 - 51846187
Alignment:
| Q |
1 |
gataagaaaattggttgtaaacgtgcaatggtggaagaaaatggaattcaagtggatcaattgttttttcatgacccagatggattcatgattgaaatat |
100 |
Q |
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|||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
51845930 |
gatatgaaaattggtttaaaacgtgcaatggttgaggaaaatggaattcaagtggatcagttgttttttcatgacccagatggattcatgattgagatat |
51846029 |
T |
|
| Q |
101 |
gcaattgtgatagtcttcctgttattcccttagctggtgaaatggttagatcatgctctagactcaaccttgagattatgccacaacagatacatcaagt |
200 |
Q |
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|||||||||||||||| ||||||||||| |||||||||| ||||||| || |||| ||||||||||| ||||| |||||||||||||||| | ||||| |
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| T |
51846030 |
gcaattgtgatagtctccctgttattcctttagctggtgggatggttacattatgccctagactcaactttgagtctatgccacaacagatagaccaagt |
51846129 |
T |
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| Q |
201 |
tgtaaagcaaatttgatcat----gatgaggccaagcttcttattttatcttaatttt |
254 |
Q |
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|| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51846130 |
tgcaaagcaaatttgatcatgctcgatgaggccaagcttcttattttatcttaatttt |
51846187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 158
Target Start/End: Original strand, 2573272 - 2573366
Alignment:
| Q |
64 |
ttttttcatgacccagatggattcatgattgaaatatgcaattgtgatagtcttcctgttattcccttagctggtgaaatggttagatcatgctc |
158 |
Q |
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||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||| ||||||| | | ||||||||||| |
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| T |
2573272 |
tttttccatgacccagatggtttcatgattgagatatgcaattgtgatagtcttcctgtgattccattagttggtgaagtagcaagatcatgctc |
2573366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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