View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17734_low_36 (Length: 265)

Name: NF17734_low_36
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17734_low_36
NF17734_low_36
[»] chr3 (16 HSPs)
chr3 (1-248)||(9369507-9369754)
chr3 (1-248)||(9347865-9348100)
chr3 (1-161)||(9340624-9340784)
chr3 (13-149)||(9352866-9353002)
chr3 (13-149)||(9377051-9377187)
chr3 (16-151)||(9617481-9617616)
chr3 (79-148)||(9614034-9614103)
chr3 (80-148)||(9494890-9494958)
chr3 (16-62)||(9646382-9646428)
chr3 (16-62)||(9655375-9655421)
chr3 (13-62)||(9695631-9695680)
chr3 (13-45)||(9613932-9613964)
chr3 (13-60)||(9485984-9486031)
chr3 (16-62)||(9626498-9626544)
chr3 (83-144)||(9343815-9343876)
chr3 (13-45)||(9348095-9348127)
[»] chr6 (5 HSPs)
chr6 (16-62)||(7029865-7029911)
chr6 (16-62)||(7025808-7025854)
chr6 (16-62)||(7041548-7041594)
chr6 (16-45)||(7012889-7012918)
chr6 (16-60)||(7046893-7046937)
[»] chr2 (1 HSPs)
chr2 (80-149)||(20694383-20694452)
[»] chr1 (2 HSPs)
chr1 (80-148)||(4439826-4439894)
chr1 (21-61)||(8814385-8814425)
[»] chr7 (1 HSPs)
chr7 (13-52)||(450126-450165)
[»] chr5 (1 HSPs)
chr5 (13-60)||(18571165-18571212)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 9369754 - 9369507
Alignment:
Q  1 ggttgatggattttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggataggannnnnnncattgggcgtggatgttcgttttctgcttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||       ||||||||||||||||||||||||||||||    
T  9369754 ggttgatggattttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttc 9369655  T
Q  101 tgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattgacgaatccgtcctcggtattggcgatatgtttcgtcgaaaacgtgtttttcac 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||  |||||||| ||||||    
T  9369654 tgcttcagatctatgtattccgaaaggaaattgtgtcgtctttattgacgaatccgtcctctgtattgacaatatgtttcatcagaaacgtgtatttcac 9369555  T
Q  201 ttggatcaaaatcaactttcgtgtggggctaaatatcttaacttgttc 248  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||    
T  9369554 ttggatcaaaatcaactttcaggtggggctaaatatcttaacttgttc 9369507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 9348100 - 9347865
Alignment:
Q  1 ggttgatggattttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggataggannnnnnncattgggcgtggatgttcgttttctgcttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||       ||||||||||||||||||||||||||||||    
T  9348100 ggttgatggattttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttc 9348001  T
Q  101 tgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattgacgaatccgtcctcggtattggcgatatgtttcgtcgaaaacgtgtttttcac 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | |||| | ||            |||||||||||||||    
T  9348000 tgcttcagatctatgtattccgaaaggaaattgtgtcgtctttattgacgaaaccgtcctctggattgacaat------------aaacgtgtttttcac 9347913  T
Q  201 ttggatcaaaatcaactttcgtgtggggctaaatatcttaacttgttc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9347912 ttggatcaaaatcaactttcgtgtggggctaaatatcttaacttgttc 9347865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 9340784 - 9340624
Alignment:
Q  1 ggttgatggattttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggataggannnnnnncattgggcgtggatgttcgttttctgcttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  9340784 ggttgatggattttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggatagggtttttttcattgggcgtggatgttcgttttctgcttc 9340685  T
Q  101 tgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattgacgaatccgtcctc 161  Q
    ||||||||||||||| ||||  |||||||||||||   |||| ||||||||||| ||||||    
T  9340684 tgcttcagatctatgtattcaaaaaggaaattgtgcaatcttcattgacgaatctgtcctc 9340624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 9353002 - 9352866
Alignment:
Q  13 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggataggannnnnnncattgggcgtggatgttcgttttctgcttctgcttcagatct 112  Q
    ||||||||| |||||||||||||||||||||||  || || |||| ||||          | ||| |||||||||||||||||||||||| ||  |||||    
T  9353002 ttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgcttctggttgggatct 9352903  T
Q  113 atgcattccgaaaggaaattgtgtcgtctttattgac 149  Q
     ||  |||| ||||||||||||||| |||||||||||    
T  9352902 gtgtcttcccaaaggaaattgtgtcatctttattgac 9352866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 9377187 - 9377051
Alignment:
Q  13 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggataggannnnnnncattgggcgtggatgttcgttttctgcttctgcttcagatct 112  Q
    ||||||||||   ||||||||||| |||||||| ||| || ||||||||||         | ||| |||||||||||||| ||||||||||||  |||||    
T  9377187 ttgatgagaacaggaagaagtgggagaagttgaagaaattaggggataggattttgtttgtggggagtggatgttcgtttcctgcttctgcttgggatct 9377088  T
Q  113 atgcattccgaaaggaaattgtgtcgtctttattgac 149  Q
     ||  |||| ||||||||||||||| |||||||||||    
T  9377087 gtgtcttcccaaaggaaattgtgtcatctttattgac 9377051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 9617481 - 9617616
Alignment:
Q  16 atgagaaggagaagaagtgggtgaagttgaggaatttcggggataggannnnnnncattgggcgtggatgttcgttttctgcttctgcttcagatctatg 115  Q
    ||||||| |||||||| |||||||||||||  ||||| |||||||||        | ||| |  ||||||||| ||||||||||||||||||||| | ||    
T  9617481 atgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgcttctgcttcagatttgtg 9617580  T
Q  116 cattccgaaaggaaattgtgtcgtctttattgacga 151  Q
      || | ||||| ||||||||| |||||||||||||    
T  9617581 tgtttccaaagggaattgtgtcatctttattgacga 9617616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 9614034 - 9614103
Alignment:
Q  79 gtggatgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattga 148  Q
    |||||||||| ||||||||||||||||||||||| ||  || | ||||||||||||||  ||||||||||    
T  9614034 gtggatgttcattttctgcttctgcttcagatctgtgtcttaccaaaggaaattgtgttatctttattga 9614103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 9494890 - 9494958
Alignment:
Q  80 tggatgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattga 148  Q
    ||||||||||||||||||||||||||| ||| | ||| || | ||||| ||||||||| ||||||||||    
T  9494890 tggatgttcgttttctgcttctgcttctgatttgtgcgtttccaaagggaattgtgtcatctttattga 9494958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 9646382 - 9646428
Alignment:
Q  16 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 62  Q
    |||||||||||||||| ||||||||||||| |||||| |||||||||    
T  9646382 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagg 9646428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 9655375 - 9655421
Alignment:
Q  16 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 62  Q
    |||||||||||||||| ||||||||||||| |||||| |||||||||    
T  9655375 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagg 9655421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 9695631 - 9695680
Alignment:
Q  13 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 62  Q
    ||||||||||||||||||||||||| |||||||  ||||| |||||||||    
T  9695631 ttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagg 9695680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 9613932 - 9613964
Alignment:
Q  13 ttgatgagaaggagaagaagtgggtgaagttga 45  Q
    |||||||||||||||||||||||||||||||||    
T  9613932 ttgatgagaaggagaagaagtgggtgaagttga 9613964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 9485984 - 9486031
Alignment:
Q  13 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggata 60  Q
    |||||||||||||||||||||||||| || |||| ||||| |||||||    
T  9485984 ttgatgagaaggagaagaagtgggtggaggtgagaaatttgggggata 9486031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 9626498 - 9626544
Alignment:
Q  16 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 62  Q
    |||||||||||||||| |||||||| |||| |||||| |||||||||    
T  9626498 atgagaaggagaagaaatgggtgaatttgatgaatttaggggatagg 9626544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 9343876 - 9343815
Alignment:
Q  83 atgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtcttta 144  Q
    |||||||||||||||||||||||| ||| | ||  |||| | |||||||||||| |||||||    
T  9343876 atgttcgttttctgcttctgcttcggatttgtgtgttcctagaggaaattgtgttgtcttta 9343815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 9348127 - 9348095
Alignment:
Q  13 ttgatgagaaggagaagaagtgggtgaagttga 45  Q
    ||||||||||||||||||||||||||| |||||    
T  9348127 ttgatgagaaggagaagaagtgggtgaggttga 9348095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 7029911 - 7029865
Alignment:
Q  16 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 62  Q
    |||||||||||||||||||||||||||||| || |||||||||||||    
T  7029911 atgagaaggagaagaagtgggtgaagttgacgagtttcggggatagg 7029865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 7025854 - 7025808
Alignment:
Q  16 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 62  Q
    |||||||||||||||||||||||||||||| || ||| || ||||||    
T  7025854 atgagaaggagaagaagtgggtgaagttgacgagtttaggagatagg 7025808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 7041594 - 7041548
Alignment:
Q  16 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 62  Q
    ||||||||||||||||||||||||||||||  | ||| |||||||||    
T  7041594 atgagaaggagaagaagtgggtgaagttgactagtttaggggatagg 7041548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 7012918 - 7012889
Alignment:
Q  16 atgagaaggagaagaagtgggtgaagttga 45  Q
    ||||||||||||||||||||||||||||||    
T  7012918 atgagaaggagaagaagtgggtgaagttga 7012889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 7046937 - 7046893
Alignment:
Q  16 atgagaaggagaagaagtgggtgaagttgaggaatttcggggata 60  Q
    |||||||||||||||||||||||||||| | || ||| |||||||    
T  7046937 atgagaaggagaagaagtgggtgaagttaacgagtttaggggata 7046893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 20694383 - 20694452
Alignment:
Q  80 tggatgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattgac 149  Q
    ||||||||||||||||||||||||||| ||| | ||  || | ||||| ||||||||| |||||||||||    
T  20694383 tggatgttcgttttctgcttctgcttcggatttgtgtgttgccaaagggaattgtgtcatctttattgac 20694452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 4439894 - 4439826
Alignment:
Q  80 tggatgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattga 148  Q
    ||||||||||||||||||||||||||| ||| | ||  || | ||||| ||||||||| ||||||||||    
T  4439894 tggatgttcgttttctgcttctgcttcggatttgtgtgtttctaaagggaattgtgtcatctttattga 4439826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 8814385 - 8814425
Alignment:
Q  21 aaggagaagaagtgggtgaagttgaggaatttcggggatag 61  Q
    ||||||||||||||||||||||||  |||||| ||||||||    
T  8814385 aaggagaagaagtgggtgaagttggcgaatttaggggatag 8814425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 450126 - 450165
Alignment:
Q  13 ttgatgagaaggagaagaagtgggtgaagttgaggaattt 52  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  450126 ttgatgagaaggagaaaaagtgggtcaagttgaggaattt 450165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 18571212 - 18571165
Alignment:
Q  13 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggata 60  Q
    |||||||||||||||||||||||||||| |||| || ||| |||||||    
T  18571212 ttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggata 18571165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University