View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17734_low_38 (Length: 251)

Name: NF17734_low_38
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17734_low_38
NF17734_low_38
[»] chr4 (4 HSPs)
chr4 (8-234)||(7909678-7909904)
chr4 (87-221)||(7793050-7793184)
chr4 (87-215)||(7778340-7778468)
chr4 (57-175)||(8514260-8514378)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 7909904 - 7909678
Alignment:
Q  8 cacttttctgttatataaaatcaaaaggcatcaccaatggtactaaattgttatatctcaaacgaaaacttcaaaatgttaaaataaggggaggagagtg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7909904 cacttttctgttatataaaatcaaaaggcatcaccaatggtactaaattgttatttctcaaacgaaaacttcaaaatgttaaaataaggggaggagagtg 7909805  T
Q  108 gtcttagaaaattagagagggtgtgaatgacattttgacatatctcaagggaagttagtttaattttctcttaaacttaacatgaaataagcacgataaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7909804 gtcttagaaaattagagagggtgtgaatgacattttgacatatctcaagggaagttagtttaattttctcttaaacttaacatgaaataagcacgataaa 7909705  T
Q  208 gtccacaaacactatgtaaagaccaaa 234  Q
    |||||||||||||||||||||||||||    
T  7909704 gtccacaaacactatgtaaagaccaaa 7909678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 221
Target Start/End: Original strand, 7793050 - 7793184
Alignment:
Q  87 taaaataaggggaggagagtggtcttagaaaattagagagggtgtgaatgacattttgacatatctcaagggaagttagtttaattttctcttaaactta 186  Q
    |||||| |||| ||||||||| ||||||||||  | || |||||||| ||||||||| | ||||||||| ||||||| || |||||| | ||||||||||    
T  7793050 taaaatgagggaaggagagtgctcttagaaaaccaaagggggtgtgagtgacattttaatatatctcaaaggaagttcgtgtaatttgcgcttaaactta 7793149  T
Q  187 acatgaaataagcacgataaagtccacaaacacta 221  Q
    |||||| |||||||| ||| |||||||||||||||    
T  7793150 acatgatataagcacaatacagtccacaaacacta 7793184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 7778340 - 7778468
Alignment:
Q  87 taaaataaggggaggagagtggtcttagaaaattagagagggtgtgaatgacattttgacatatctcaagggaagttagtttaattttctcttaaactta 186  Q
    |||||| |||||||||||||| |||||| ||| || || | |||||| |||||||||||||||||| || |||||||||| ||||||   ||||||||||    
T  7778340 taaaatgaggggaggagagtgctcttaggaaactaaagggagtgtgagtgacattttgacatatcttaaaggaagttagtgtaatttgtccttaaactta 7778439  T
Q  187 acatgaaataagcacgataaagtccacaa 215  Q
    |||||| |||||  | |||||||||||||    
T  7778440 acatgatataagtgcaataaagtccacaa 7778468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 175
Target Start/End: Original strand, 8514260 - 8514378
Alignment:
Q  57 gttatatctcaaacgaaaacttcaaaatgttaaaataaggggaggagagtggtcttagaaaattagagagggtgtgaatgacattttgacatatctcaag 156  Q
    ||||| ||||||| | |||||| | ||||||||||| ||| |||  ||||| | |||||||| || || ||||||||  |||||||||||||||||||||    
T  8514260 gttatttctcaaatggaaactttagaatgttaaaatgaggagagatgagtgtttttagaaaactaaagggggtgtgagcgacattttgacatatctcaag 8514359  T
Q  157 ggaagttagtttaattttc 175  Q
    ||| |||||| ||||||||    
T  8514360 ggaggttagtgtaattttc 8514378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University