View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17734_low_47 (Length: 214)
Name: NF17734_low_47
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17734_low_47 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 47967616 - 47967401
Alignment:
| Q |
1 |
tcctccttcttaaaatcatttttattagtcattatcattattaatttatatacaaaattttctttgatgggggagaaacggttgtacaaagggagaaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47967616 |
tcctccttcttaaaatcatttttattagtcattatcattaataatttatatacaaaatttcctttgatgggggagaaacggttgtacaaagggagaaaat |
47967517 |
T |
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| Q |
101 |
atattctttctatataaactcacacacatttgctttcacggtaatgtagagaaaaa-gaccattgttcttcttttatttattcaatg-ttttagaaaatg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||| |
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| T |
47967516 |
atattctttctatataaactcacacacatttgctttcacggtaatgtagagaaaaaggaacattgttcttcttttatttattcaatgtttttagaaaatg |
47967417 |
T |
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| Q |
199 |
aattttgaggtatcta |
214 |
Q |
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|||||||||||||||| |
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| T |
47967416 |
aattttgaggtatcta |
47967401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 37338449 - 37338661
Alignment:
| Q |
3 |
ctccttcttaaaatcatttttattagtcattatcattattaatttatatacaaaattttctttgatgggggagaaacggttgtacaaagggagaaaatat |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||||| ||||| ||||||||||| |||| |
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| T |
37338449 |
ctccttcttaaaatcatttttattagtcattatcattaataattaatatacaaaatttccttttatgggggagaaactgttgtccaaagggagaatatat |
37338548 |
T |
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| Q |
103 |
attctttctatataaactcacacacatttgctttcacggtaatgtagagaaaaagaccattgttcttcttttatttattcaatgt-tttagaaaatgaat |
201 |
Q |
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| T |
37338549 |
gttctttctatataaattcacacacatttgttttcacggtaatgtagagaaaaagaatattgtttttcttttatttattcaatgtgtttagaaaatgaaa |
37338648 |
T |
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| Q |
202 |
tttgaggtatcta |
214 |
Q |
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| T |
37338649 |
tttgaggtatcta |
37338661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 11299676 - 11299574
Alignment:
| Q |
88 |
aaagggagaaaatatattctttctatataaactcacacacatttgctttcacggtaatgtagagaaaaagaccattgttcttcttttatttattcaatgt |
187 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11299676 |
aaagggagaaaatatgttctttttatataaactcacacacatttgctttcacggtaatgtagagaaaaagaatattgttcttcttttatttattcaatgt |
11299577 |
T |
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| Q |
188 |
ttt |
190 |
Q |
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||| |
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| T |
11299576 |
ttt |
11299574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 15297263 - 15297462
Alignment:
| Q |
3 |
ctccttcttaaaatcatttttattagtcattatcattattaatttatatacaaaattttctttgatgggggagaaacggttgtacaaagggagaaaatat |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||||||||||||||||||||| | |||| |
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| T |
15297263 |
ctccttcttaaaatcatttttattagtcattatcattaataattaatatacaaaatttccttttatgggggagaaacggttgtacaaagggaggatatat |
15297362 |
T |
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| Q |
103 |
attctttctatataaactcacacacatttgctttcacggtaatgtagagaaaaagaccattgttcttcttttatttattcaatg-ttttagaaaatgaat |
201 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |
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| T |
15297363 |
gttctttctatataaactcacacacatttgttttcacggtaatgtagagaaaaagaatattg---ttcttttatttattcaatgtttttagaaaatgaat |
15297459 |
T |
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