View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17734_low_48 (Length: 213)
Name: NF17734_low_48
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17734_low_48 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 4230144 - 4230001
Alignment:
| Q |
1 |
tagttgttgtgttggcacctaataattgtannnnnnnnnnnaa--ttctttttattgtgtaattttatgaacctttcaattatgccattgtaatctaaga |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4230144 |
tagttgttgtgttggcacctaataattgtatttttttttttaaatttcgttttattgtgtaattttatgaacctttcaattatgccattgtaatctaaga |
4230045 |
T |
|
| Q |
99 |
tattggtaatgaaatggatcaagatactaaagaatattataatt |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4230044 |
tattggtaatgaaatggatcaagatactaaagaatattataatt |
4230001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 4223200 - 4223112
Alignment:
| Q |
46 |
ctttttattgtgtaattttatgaacctttcaattatgccattgtaatctaagatattggtaatgaaatggatcaagatactaaagaata |
134 |
Q |
| |
|
||||| |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| ||||| |
|
|
| T |
4223200 |
cttttcattgtgtaatattatgatcctttcaattatgtcattgtaatctaagatattggtaatgaaatgaatcaaggcactaatgaata |
4223112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 209
Target Start/End: Complemental strand, 4239616 - 4239462
Alignment:
| Q |
44 |
ttctttttattgtgtaattttatgaacctttcaattatgccattgtaatctaagatattggtaatgaaatggatcaagatactaaagaatattataatta |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4239616 |
ttctttttattgtgtaattttatgaacctttcaattatgc---------------tattggtaatgaaatggatcaagatactaaagaatattataatta |
4239532 |
T |
|
| Q |
144 |
----tnnnnnnnnnnnnnnaattttggatgtatctccatgacctccaaaatagggatattacattttctt |
209 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
4239531 |
ttttttttctctctctcttaattttggatgtatctccattacctccaaaataggtatattacattttctt |
4239462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 4229977 - 4229927
Alignment:
| Q |
159 |
aattttggatgtatctccatgacctccaaaatagggatattacattttctt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
4229977 |
aattttggatgtatctccatgacctccaaaataggtatatttcattttctt |
4229927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 4223082 - 4223031
Alignment:
| Q |
159 |
aattttggatgtatctcc-atgacctccaaaatagggatattacattttctt |
209 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| |||||||||| |
|
|
| T |
4223082 |
aattttggatgtatctcccatgacctccaaaataggtatatcacattttctt |
4223031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 4248393 - 4248343
Alignment:
| Q |
159 |
aattttggatgtatctccatgacctccaaaatagggatattacattttctt |
209 |
Q |
| |
|
|||||||||| ||||||| | |||||||||||||| |||| |||||||||| |
|
|
| T |
4248393 |
aattttggatatatctccgtaacctccaaaataggtatatcacattttctt |
4248343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 26316057 - 26316113
Alignment:
| Q |
58 |
taattttatgaacctttcaattatgccattgtaatctaagatattggtaatgaaatg |
114 |
Q |
| |
|
|||||| || || |||| ||||||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
26316057 |
taatttcataaatcttttaattatgcctttgtactctaagatgttggtaatgaaatg |
26316113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University