View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17734_low_5 (Length: 588)

Name: NF17734_low_5
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17734_low_5
NF17734_low_5
[»] chr2 (38 HSPs)
chr2 (100-560)||(13138731-13139211)
chr2 (300-575)||(45702339-45702624)
chr2 (331-451)||(22863935-22864055)
chr2 (300-453)||(45469286-45469440)
chr2 (491-560)||(17007479-17007548)
chr2 (491-560)||(17065028-17065097)
chr2 (491-575)||(40903435-40903519)
chr2 (491-558)||(45469515-45469582)
chr2 (491-575)||(5663999-5664083)
chr2 (297-478)||(15139443-15139616)
chr2 (491-555)||(33036319-33036383)
chr2 (314-453)||(16936631-16936770)
chr2 (314-453)||(17007291-17007430)
chr2 (314-453)||(17064840-17064979)
chr2 (491-560)||(16936817-16936884)
chr2 (300-390)||(42183222-42183312)
chr2 (491-552)||(355173-355234)
chr2 (491-580)||(3251412-3251501)
chr2 (300-453)||(26403768-26403921)
chr2 (491-575)||(40369561-40369645)
chr2 (491-558)||(37326535-37326602)
chr2 (491-565)||(24220081-24220155)
chr2 (491-549)||(45717945-45718003)
chr2 (497-549)||(26245841-26245893)
chr2 (492-575)||(1841963-1842046)
chr2 (492-575)||(26403636-26403719)
chr2 (497-575)||(18698045-18698123)
chr2 (1-34)||(13138631-13138664)
chr2 (314-362)||(13550723-13550771)
chr2 (314-362)||(13551176-13551224)
chr2 (491-575)||(33411369-33411453)
chr2 (491-549)||(21829175-21829232)
chr2 (491-573)||(23479749-23479831)
chr2 (491-549)||(42051568-42051626)
chr2 (491-519)||(15139393-15139421)
chr2 (314-406)||(26894054-26894146)
chr2 (314-406)||(26899493-26899585)
chr2 (523-555)||(39529796-39529828)
[»] chr5 (24 HSPs)
chr5 (137-575)||(17697014-17697473)
chr5 (293-575)||(17946929-17947221)
chr5 (300-453)||(9195638-9195791)
chr5 (300-453)||(20252664-20252817)
chr5 (491-560)||(21823887-21823956)
chr5 (491-553)||(11978964-11979026)
chr5 (300-441)||(23255955-23256095)
chr5 (336-448)||(21824009-21824121)
chr5 (191-264)||(9195515-9195588)
chr5 (491-553)||(6023640-6023702)
chr5 (497-558)||(20427509-20427571)
chr5 (491-551)||(4634838-4634898)
chr5 (491-575)||(36420497-36420581)
chr5 (491-575)||(41768164-41768248)
chr5 (491-558)||(26370293-26370360)
chr5 (137-174)||(17946855-17946892)
chr5 (297-378)||(21270996-21271077)
chr5 (313-362)||(30509533-30509582)
chr5 (313-362)||(30549873-30549922)
chr5 (491-556)||(43463676-43463741)
chr5 (291-379)||(6023430-6023518)
chr5 (425-453)||(10460885-10460913)
chr5 (314-362)||(10486406-10486454)
chr5 (491-543)||(41914551-41914603)
[»] chr8 (23 HSPs)
chr8 (137-560)||(8305594-8306037)
chr8 (137-575)||(21312433-21312892)
chr8 (491-558)||(25108963-25109030)
chr8 (491-556)||(24425534-24425599)
chr8 (491-575)||(39920663-39920747)
chr8 (491-575)||(42451903-42451987)
chr8 (491-572)||(1010757-1010838)
chr8 (491-558)||(3774820-3774887)
chr8 (294-449)||(20888138-20888285)
chr8 (491-560)||(8445606-8445675)
chr8 (491-552)||(25320604-25320665)
chr8 (497-572)||(1682169-1682244)
chr8 (491-549)||(23448162-23448220)
chr8 (491-545)||(29978006-29978060)
chr8 (138-282)||(20887970-20888112)
chr8 (336-453)||(39920498-39920615)
chr8 (491-575)||(31462191-31462275)
chr8 (491-558)||(13091138-13091205)
chr8 (491-558)||(20888347-20888414)
chr8 (523-557)||(15014326-15014360)
chr8 (312-382)||(25193692-25193762)
chr8 (300-393)||(442342-442435)
chr8 (491-572)||(25720023-25720104)
[»] chr6 (25 HSPs)
chr6 (145-575)||(2855102-2855553)
chr6 (294-453)||(5194326-5194485)
chr6 (138-420)||(29359233-29359525)
chr6 (138-264)||(4104057-4104181)
chr6 (294-453)||(18488495-18488654)
chr6 (342-449)||(20209053-20209160)
chr6 (342-449)||(22103076-22103183)
chr6 (491-560)||(16478954-16479023)
chr6 (491-580)||(18488358-18488447)
chr6 (498-580)||(12334883-12334965)
chr6 (491-575)||(12608234-12608317)
chr6 (336-448)||(16478789-16478901)
chr6 (491-558)||(3298024-3298091)
chr6 (491-558)||(12913608-12913675)
chr6 (491-560)||(17738950-17739019)
chr6 (491-555)||(15171441-15171505)
chr6 (491-555)||(15180213-15180277)
chr6 (491-558)||(9857457-9857524)
chr6 (492-575)||(19249778-19249861)
chr6 (491-552)||(15471911-15471972)
chr6 (491-575)||(8754271-8754355)
chr6 (491-555)||(15161436-15161500)
chr6 (396-453)||(12608129-12608185)
chr6 (292-361)||(31292548-31292617)
chr6 (523-551)||(6345468-6345496)
[»] chr7 (29 HSPs)
chr7 (137-478)||(27292985-27293338)
chr7 (138-453)||(8751244-8751566)
chr7 (138-290)||(38650239-38650389)
chr7 (300-478)||(6457840-6458018)
chr7 (294-453)||(641695-641854)
chr7 (497-575)||(27292878-27292956)
chr7 (290-436)||(17262188-17262334)
chr7 (491-580)||(38430382-38430471)
chr7 (491-575)||(8751115-8751199)
chr7 (494-570)||(12463657-12463733)
chr7 (297-444)||(22359837-22359984)
chr7 (491-555)||(6457745-6457809)
chr7 (491-555)||(7288139-7288203)
chr7 (491-558)||(17195282-17195349)
chr7 (491-549)||(9601540-9601598)
chr7 (491-549)||(9829111-9829169)
chr7 (491-573)||(48778896-48778978)
chr7 (491-573)||(641564-641646)
chr7 (491-549)||(13063094-13063152)
chr7 (499-555)||(20367902-20367958)
chr7 (491-558)||(13808724-13808791)
chr7 (491-558)||(38140918-38140985)
chr7 (491-573)||(44232495-44232577)
chr7 (144-258)||(6458074-6458186)
chr7 (491-558)||(19322901-19322968)
chr7 (497-558)||(9967585-9967646)
chr7 (317-402)||(32482455-32482540)
chr7 (523-555)||(3942875-3942907)
chr7 (290-362)||(31396393-31396465)
[»] chr3 (28 HSPs)
chr3 (137-575)||(12214155-12214613)
chr3 (491-558)||(42830018-42830085)
chr3 (294-448)||(30044020-30044174)
chr3 (297-378)||(19668632-19668713)
chr3 (497-573)||(36731766-36731842)
chr3 (491-555)||(53504511-53504575)
chr3 (492-558)||(19566194-19566260)
chr3 (491-545)||(30827872-30827926)
chr3 (491-555)||(14091491-14091555)
chr3 (491-575)||(15204998-15205082)
chr3 (491-575)||(15244020-15244104)
chr3 (503-567)||(21735052-21735116)
chr3 (491-551)||(32517875-32517935)
chr3 (491-573)||(20115699-20115781)
chr3 (301-392)||(26516486-26516577)
chr3 (297-403)||(1231669-1231775)
chr3 (491-548)||(462677-462734)
chr3 (492-573)||(26198421-26198502)
chr3 (491-558)||(644902-644969)
chr3 (491-558)||(15028760-15028827)
chr3 (491-558)||(17914459-17914526)
chr3 (491-558)||(21080624-21080691)
chr3 (491-558)||(21085213-21085280)
chr3 (491-570)||(39051021-39051100)
chr3 (502-552)||(1231509-1231559)
chr3 (491-557)||(18378879-18378945)
chr3 (491-557)||(41225354-41225420)
chr3 (506-555)||(25049791-25049840)
[»] chr4 (33 HSPs)
chr4 (300-575)||(17188444-17188728)
chr4 (290-478)||(39867081-39867269)
chr4 (308-453)||(28066987-28067132)
chr4 (337-441)||(137037-137141)
chr4 (497-573)||(5320243-5320319)
chr4 (290-379)||(12726886-12726975)
chr4 (491-575)||(12727097-12727181)
chr4 (491-555)||(22196302-22196366)
chr4 (312-446)||(26892133-26892267)
chr4 (491-544)||(39867006-39867059)
chr4 (491-558)||(53481520-53481587)
chr4 (492-558)||(10040091-10040157)
chr4 (491-555)||(17535969-17536033)
chr4 (491-555)||(37872006-37872070)
chr4 (491-575)||(39983472-39983556)
chr4 (491-555)||(51072000-51072064)
chr4 (497-560)||(19498961-19499024)
chr4 (491-545)||(32227855-32227909)
chr4 (498-551)||(46610677-46610730)
chr4 (297-453)||(14547425-14547581)
chr4 (491-555)||(18871023-18871087)
chr4 (503-555)||(28066875-28066927)
chr4 (333-441)||(46191952-46192060)
chr4 (138-264)||(14547255-14547379)
chr4 (144-258)||(17188276-17188388)
chr4 (351-410)||(21140749-21140808)
chr4 (491-558)||(48639404-48639471)
chr4 (139-204)||(28067250-28067313)
chr4 (500-546)||(53100262-53100308)
chr4 (501-546)||(10358395-10358440)
chr4 (333-393)||(16698898-16698958)
chr4 (144-258)||(39867315-39867425)
chr4 (331-403)||(46218289-46218361)
[»] scaffold0116 (2 HSPs)
scaffold0116 (137-388)||(43172-43435)
scaffold0116 (137-388)||(47092-47355)
[»] scaffold0155 (2 HSPs)
scaffold0155 (300-449)||(32757-32906)
scaffold0155 (491-575)||(32958-33042)
[»] chr1 (20 HSPs)
chr1 (339-449)||(16631181-16631291)
chr1 (342-478)||(34503978-34504113)
chr1 (492-555)||(36983980-36984043)
chr1 (491-552)||(50817245-50817306)
chr1 (491-558)||(32303969-32304036)
chr1 (491-558)||(33569653-33569720)
chr1 (491-558)||(48241170-48241237)
chr1 (491-549)||(15174575-15174633)
chr1 (303-362)||(11649758-11649817)
chr1 (497-560)||(11649904-11649967)
chr1 (491-558)||(34548041-34548108)
chr1 (497-574)||(14206162-14206239)
chr1 (290-406)||(32303758-32303874)
chr1 (491-551)||(43914145-43914205)
chr1 (491-558)||(16586479-16586546)
chr1 (491-549)||(14975981-14976039)
chr1 (291-403)||(13112733-13112845)
chr1 (491-573)||(13112552-13112634)
chr1 (145-258)||(16631386-16631497)
chr1 (506-575)||(41805994-41806063)
[»] scaffold0153 (1 HSPs)
scaffold0153 (491-560)||(23604-23673)
[»] scaffold0031 (1 HSPs)
scaffold0031 (491-558)||(67248-67315)
[»] scaffold0693 (1 HSPs)
scaffold0693 (491-558)||(294-361)
[»] scaffold0309 (1 HSPs)
scaffold0309 (491-573)||(550-632)
[»] scaffold0074 (1 HSPs)
scaffold0074 (294-453)||(37119-37286)
[»] scaffold0533 (1 HSPs)
scaffold0533 (491-555)||(734-798)
[»] scaffold0015 (1 HSPs)
scaffold0015 (491-555)||(5982-6046)
[»] scaffold0131 (1 HSPs)
scaffold0131 (314-362)||(4042-4090)
[»] scaffold0029 (1 HSPs)
scaffold0029 (314-362)||(134340-134388)
[»] scaffold0002 (2 HSPs)
scaffold0002 (314-362)||(312167-312215)
scaffold0002 (314-362)||(327621-327669)


Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 100 - 560
Target Start/End: Original strand, 13138731 - 13139211
Alignment:
Q  100 ttgttgattttaatgcaaacttaataattttagtttctttatcggtccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatca 199  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  13138731 ttgttgattttaatgcaaacttaataattttagtttctttatcagtccaaaagaaagtgctactaccatttcctaccac--cctcctaatattatcatca 13138828  T
Q  200 aaccaattacctactcctgatccgatcccttccctcaccttacacatcattctccaccaaccagacacctctctccc----tccttcctgaattc----- 290  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||         
T  13138829 aaccaattacctactcctgatccgaccccttccctcaccttacacatcattctccaccaaccagacacctctctccctccttccttcctgaattcgacca 13138928  T
Q  291 ---------ccgtaccgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaatt 381  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  13138929 ccaacctctccgtaccgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctaacaaagataaattaaatt 13139028  T
Q  382 cacctaacctccgcacccccaaaccacctcgattcacaggtaaacaaatagaatcccattttatccaagcaannnnnnnagagacctcacaacccc---- 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||        
T  13139029 cacctaacctccgcacccccaaaccacctcgattcacaggtaaacaaatagaatcccattttatccaagcaatttttttagagacctcacaaccccaaaa 13139128  T
Q  478 cnnnnnnnnnnnngattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggata 560  Q
                 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13139129 aaaataaaaaatagattcgatagaagaaattatacttgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggata 13139211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 300 - 575
Target Start/End: Original strand, 45702339 - 45702624
Alignment:
Q  300 gcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcaccc 399  Q
    |||||||| |||||||||||||| || ||  ||||||||||||  ||||| ||||| |||||| | ||||||||||||||||| ||||||||||| ||||    
T  45702339 gcctttaaaacacgataccacaacccttccttatcaaccaacagtctccaacaccacttccctaacaaagataaattaaattcccctaacctccgaaccc 45702438  T
Q  400 ccaaaccacctcgattcacaggtaaacaaatagaatcccattttatccaagcaannnnnnnagagacctcacaaccccc----------nnnnnnnnnnn 489  Q
    |||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||       || |||||||||||||||                         
T  45702439 ccaagccaccacgatccacaggtaaacaaatagtatcccattttatccaagcaattattttagcgacctcacaacccccccaaaaaaatgttttaaataa 45702538  T
Q  490 ngattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
     ||||||||||| ||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |  ||||| |||||||    
T  45702539 agattcgatagaggaaattatacctgtaggagccttgaagaaggaaagaaagtaaaccggaagagaggacatgacagacttcagaa 45702624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 331 - 451
Target Start/End: Original strand, 22863935 - 22864055
Alignment:
Q  331 tatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaggtaaacaaat 430  Q
    ||||| |||||| |||||| ||||| |||||| | ||||||||||||||||| ||||||||||  |||||||||||||| |||| |||||||||||||||    
T  22863935 tatcacccaacatcctccaacaccacttccctaacaaagataaattaaattctcctaacctccaaacccccaaaccaccacgatccacaggtaaacaaat 22864034  T
Q  431 agaatcccattttatccaagc 451  Q
    ||||||  |||||||||||||    
T  22864035 agaatctgattttatccaagc 22864055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 300 - 453
Target Start/End: Original strand, 45469286 - 45469440
Alignment:
Q  300 gcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcaccc 399  Q
    |||||||| |||||||||  ||| || ||  ||||||||||||  |||||||| || |||||| | |||| |||||||||||| ||||||||||| ||||    
T  45469286 gcctttaaaacacgatactgcaacccttccttatcaaccaacattctccagcatcacttccctaacaaaggtaaattaaattcccctaacctccgaaccc 45469385  T
Q  400 ccaaaccacctcgattcacaggtaaa-caaatagaatcccattttatccaagcaa 453  Q
    |||| || || |||| |||||||||| ||||||| ||||||||||||||||||||    
T  45469386 ccaagcctccacgatccacaggtaaaccaaatagtatcccattttatccaagcaa 45469440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 491 - 560
Target Start/End: Original strand, 17007479 - 17007548
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggata 560  Q
    ||||||||||| ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  17007479 gattcgatagaggaaatgatacctgtaggtgccttgaagaaggaaagaaagtaaaccggaagagaggata 17007548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 491 - 560
Target Start/End: Original strand, 17065028 - 17065097
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggata 560  Q
    ||||||||||| ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  17065028 gattcgatagaggaaatgatacctgtaggtgccttgaagaaggaaagaaagtaaaccggaagagaggata 17065097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 491 - 575
Target Start/End: Complemental strand, 40903519 - 40903435
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||| ||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| |  || ||||||||||    
T  40903519 gattcaatagaagaaattatacctgcaggggccttgaaaaaggaaagaaagtaaaccggaagagaggacaagacggatttcagaa 40903435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 45469515 - 45469582
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||    
T  45469515 gattcgatagaggaaattatacctgtaggagccttgaagaaggaaagaaagtaaaccggaagagagga 45469582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 491 - 575
Target Start/End: Original strand, 5663999 - 5664083
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||| ||||||||||||||||||||||| |  ||||| ||||||||||||||||||||||||||||| |  ||||| |||||||    
T  5663999 gattcaatagaagaaattatacctgcaggggctttgaaaaaggaaagaaagtaaaccggaagagaggacatgacagacttcagaa 5664083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 297 - 478
Target Start/End: Complemental strand, 15139616 - 15139443
Alignment:
Q  297 cgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgca 396  Q
    |||||||| ||||||||| || |||| || ||  |||| |||| ||||||||| ||||| |||||| |||| || ||||||||||| ||||||||         
T  15139616 cgtgccttgaagacacgaaactacaacccttccttatccaccatcaacctccaacaccacttccctaataatgacaaattaaattcccctaacct----- 15139522  T
Q  397 cccccaaaccacctcgattcacaggtaaacaaatagaatcccattttatccaagcaannnnnnnagagacctcacaaccccc 478  Q
       |||||||| ||| ||||||| ||||||||| | |||||||||| ||||||||||       ||||||||||||||||||    
T  15139521 ---ccaaaccaactctattcacaagtaaacaaacataatcccatttaatccaagcaatttttttagagacctcacaaccccc 15139443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 555
Target Start/End: Original strand, 33036319 - 33036383
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    |||||||| ||||||||||||||||  || | |||||||||||||||||||||||||||||||||    
T  33036319 gattcgatggaagaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggaagaga 33036383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 314 - 453
Target Start/End: Original strand, 16936631 - 16936770
Alignment:
Q  314 ataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcga 413  Q
    ||||||||| ||||   |||| |||||||||||||| ||||| ||  || | | ||| |||||||| || |||||| |||| ||||| ||||||||| ||    
T  16936631 ataccacaagccattcttatccaccaacaacctccaacaccacttatctaaaagagacaaattaaaatcccctaacttccgtacccctaaaccaccttga 16936730  T
Q  414 ttcacaggtaaacaaatagaatcccattttatccaagcaa 453  Q
     ||| ||||||||||| ||| ||||| |||||||||||||    
T  16936731 ctcataggtaaacaaacagagtcccactttatccaagcaa 16936770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 314 - 453
Target Start/End: Original strand, 17007291 - 17007430
Alignment:
Q  314 ataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcga 413  Q
    ||||||||| ||||   |||| |||||||||||||| ||||| ||  || | | ||| |||||||| || |||||| |||| ||||| ||||||||| ||    
T  17007291 ataccacaagccattcttatccaccaacaacctccaacaccacttatctaaaagagacaaattaaaatcccctaacttccgtacccctaaaccaccttga 17007390  T
Q  414 ttcacaggtaaacaaatagaatcccattttatccaagcaa 453  Q
     ||| ||||||||||| ||| ||||| |||||||||||||    
T  17007391 ctcataggtaaacaaacagagtcccactttatccaagcaa 17007430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 314 - 453
Target Start/End: Original strand, 17064840 - 17064979
Alignment:
Q  314 ataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcga 413  Q
    ||||||||| ||||   |||| |||||||||||||| ||||| ||  || | | ||| |||||||| || |||||| |||| ||||| ||||||||| ||    
T  17064840 ataccacaagccattcttatccaccaacaacctccaacaccacttatctaaaagagacaaattaaaatcccctaacttccgtacccctaaaccaccttga 17064939  T
Q  414 ttcacaggtaaacaaatagaatcccattttatccaagcaa 453  Q
     ||| ||||||||||| ||| ||||| |||||||||||||    
T  17064940 ctcataggtaaacaaacagagtcccactttatccaagcaa 17064979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 491 - 560
Target Start/End: Original strand, 16936817 - 16936884
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggata 560  Q
    ||||||||||| ||||| |||||||   ||| ||||||||||||||||||||||||||||||||||||||    
T  16936817 gattcgatagaggaaatgatacctgt--gtgccttgaagaaggaaagaaagtaaaccggaagagaggata 16936884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 300 - 390
Target Start/End: Complemental strand, 42183312 - 42183222
Alignment:
Q  300 gcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacc 390  Q
    |||||||| || |||||||| || |||||  ||||||||||||||||||| ||||| || ||| | ||||||||||||||||| |||||||    
T  42183312 gcctttaacactcgataccataacccatccttatcaaccaacaacctccaacaccactttcctaacaaagataaattaaattcccctaacc 42183222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 552
Target Start/End: Complemental strand, 355234 - 355173
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaag 552  Q
    ||||| |||||||||||||||| ||| || | ||||||||||||||||||||||||||||||    
T  355234 gattcaatagaagaaattatacatgcgggagccttgaagaaggaaagaaagtaaaccggaag 355173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 580
Target Start/End: Original strand, 3251412 - 3251501
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaataatc 580  Q
    |||||||||||||||||||||||||  || | | | ||||||||||||||||||||||||| ||| || |  ||||||||||||| ||||    
T  3251412 gattcgatagaagaaattatacctgtgggagccctcaagaaggaaagaaagtaaaccggaatagatgacaggacagatttcagaagaatc 3251501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 453
Target Start/End: Complemental strand, 26403921 - 26403768
Alignment:
Q  300 gcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcaccc 399  Q
    |||||||| ||||| |||||||| |  ||  ||||| | ||||||||| | ||| | |||||| | ||||||||||||||||| ||||||||||  ||||    
T  26403921 gcctttaacacacggtaccacaacctgtccttatcatctaacaacctctaccacgacttccctaacaaagataaattaaattcccctaacctcctaaccc 26403822  T
Q  400 ccaaaccacctcgattcacaggtaaacaaatagaatcccattttatccaagcaa 453  Q
    |||| || ||  ||| ||||  |||||||| | ||||||| |||||||||||||    
T  26403821 ccaagcctccatgatccacaaataaacaaacaaaatcccactttatccaagcaa 26403768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 491 - 575
Target Start/End: Original strand, 40369561 - 40369645
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||||||||||||||||||||||||| | |  ||||| ||||||||||||||||  || |||||||| |  |||||||||||||    
T  40369561 gattcgatagaagaaattatacctgcaagggctttgaaaaaggaaagaaagtaaattggtagagaggacaagacagatttcagaa 40369645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 37326535 - 37326602
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||| |||||||||||||||| |||| | |  ||||| |||||||||||||||||||||||||||||    
T  37326535 gattcaatagaagaaattatacatgcatgagctttgaaaaaggaaagaaagtaaaccggaagagagga 37326602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 491 - 565
Target Start/End: Complemental strand, 24220155 - 24220081
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaaca 565  Q
    ||||| |||||||||||||||||| |||| |  ||||| |||||||||||||||||| | |||||||||| ||||    
T  24220155 gattcaatagaagaaattatacctacaggggctttgaaaaaggaaagaaagtaaaccagcagagaggatagaaca 24220081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 45717945 - 45718003
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccgg 549  Q
    ||||| |||||||| ||||||||||| || | |||||||||||||||||||||||||||    
T  45717945 gattctatagaagagattatacctgcgggggccttgaagaaggaaagaaagtaaaccgg 45718003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 497 - 549
Target Start/End: Complemental strand, 26245893 - 26245841
Alignment:
Q  497 atagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccgg 549  Q
    |||||||| ||||||||||| || | |||||||||||||||||||||||||||    
T  26245893 atagaagagattatacctgcgggggccttgaagaaggaaagaaagtaaaccgg 26245841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 492 - 575
Target Start/End: Complemental strand, 1842046 - 1841963
Alignment:
Q  492 attcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    |||| |||||| ||||||||| |||||| |  ||| | ||||||||||||||||||||||||||||| |  ||| |||||||||    
T  1842046 attcaatagaataaattatacttgcaggggctttggaaaaggaaagaaagtaaaccggaagagaggacatgacaaatttcagaa 1841963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 492 - 575
Target Start/End: Complemental strand, 26403719 - 26403636
Alignment:
Q  492 attcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    |||| |||||||||||||||| || ||| | || ||| ||||||||||||||||| ||||||||||| |  |||||||| ||||    
T  26403719 attcaatagaagaaattatacatgtaggagcctggaaaaaggaaagaaagtaaactggaagagaggacatgacagattttagaa 26403636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 575
Target Start/End: Original strand, 18698045 - 18698123
Alignment:
Q  497 atagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||||||||||||| ||||||| |  | ||| ||||||||||| ||||| || | |||||||| ||||||||||||||    
T  18698045 atagaagaaattatatctgcaggggcttcgaaaaaggaaagaaaataaactggcaaagaggataaaacagatttcagaa 18698123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 13138631 - 13138664
Alignment:
Q  1 tattgggaaatcttaaggtattggttaagagaac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  13138631 tattgggaaatcttaaggtattggttaagagaac 13138664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 362
Target Start/End: Original strand, 13550723 - 13550771
Alignment:
Q  314 ataccacaaaccatctatatcaaccaacaacctccagcaccatttccct 362  Q
    |||||||||| || || ||||||||||||||||||| ||||||||||||    
T  13550723 ataccacaaatcacctctatcaaccaacaacctccaacaccatttccct 13550771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 362
Target Start/End: Original strand, 13551176 - 13551224
Alignment:
Q  314 ataccacaaaccatctatatcaaccaacaacctccagcaccatttccct 362  Q
    |||||||||| || || ||||||||||||||||||| ||||||||||||    
T  13551176 ataccacaaatcacctctatcaaccaacaacctccaacaccatttccct 13551224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 575
Target Start/End: Complemental strand, 33411453 - 33411369
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||| ||||| |||||||||||||| || |  ||||| ||||||||||||||||||| ||  || || | ||||||||||||||    
T  33411453 gattcaatagaggaaattatacctgcgggggctttgaaaaaggaaagaaagtaaaccgaaatggaagacagaacagatttcagaa 33411369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 21829232 - 21829175
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccgg 549  Q
    |||||||||||||||||||||| ||| || || ||||| || |||||||||||||||||    
T  21829232 gattcgatagaagaaattatacttgcgggggt-ttgaaaaaagaaagaaagtaaaccgg 21829175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 491 - 573
Target Start/End: Complemental strand, 23479831 - 23479749
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcag 573  Q
    ||||| ||||||||||| |||| |||||| | |||||||||||||||||| || |  || |||||||| | |||||| |||||    
T  23479831 gattcaatagaagaaatgatacatgcaggagccttgaagaaggaaagaaaatagattgggagagaggacaaaacagacttcag 23479749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 42051626 - 42051568
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccgg 549  Q
    |||||||| ||||| ||||||||||  |||| |||||||||||||| ||| ||||||||    
T  42051626 gattcgatggaagagattatacctgtgggtgccttgaagaaggaaataaaataaaccgg 42051568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 519
Target Start/End: Complemental strand, 15139421 - 15139393
Alignment:
Q  491 gattcgatagaagaaattatacctgcagg 519  Q
    |||||||||||||||||||||||||||||    
T  15139421 gattcgatagaagaaattatacctgcagg 15139393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 26894146 - 26894054
Alignment:
Q  314 ataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaacc 406  Q
    ||||||||||||| |||| || ||||||| || ||| |||||||| ||| | |||| ||||||||| ||    ||| ||||||||||||||||    
T  26894146 ataccacaaaccacctatgtccaccaacatccgccaacaccattttcctaacaaagttaaattaaactccttcaacttccgcacccccaaacc 26894054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 26899585 - 26899493
Alignment:
Q  314 ataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaacc 406  Q
    ||||||||||||| |||| || ||||||| || ||| |||||||| ||| | |||| ||||||||| ||    ||| ||||||||||||||||    
T  26899585 ataccacaaaccacctatgtccaccaacatccgccaacaccattttcctaacaaagttaaattaaactccttcaacttccgcacccccaaacc 26899493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 523 - 555
Target Start/End: Original strand, 39529796 - 39529828
Alignment:
Q  523 cttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    ||||||||||||||||||||| |||||||||||    
T  39529796 cttgaagaaggaaagaaagtagaccggaagaga 39529828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 137 - 575
Target Start/End: Original strand, 17697014 - 17697473
Alignment:
Q  137 tttatcggtccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatcaaaccaattacctactcctgatccgatcccttccctca 236  Q
    |||||| ||||||||||||||||||||||||||||||||| |  |||||||| |||| |||||||||| ||||||||||| ||||| |  || |||||||    
T  17697014 tttatcagtccaaaagaaagtgctactaccatttcctacctc--cctcctaacattaacatcaaaccagttacctactcccgatcctactccatccctca 17697111  T
Q  237 ccttacacatcattctccaccaaccagacacctctctccctccttcctgaattc--------------ccgtaccgtgcctttaagacacgataccacaa 322  Q
    |||| |||| ||| ||||||||||| ||| ||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||    
T  17697112 ccttgcacaacatactccaccaaccggacgcctctctccctccttcctgaattctaccaccaaccttcccgtaccgtgcctttaagacacgataccacaa 17697211  T
Q  323 accatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaggt 422  Q
     || ||| | |||| |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17697212 gccttctttgtcaatcaacaacctccaacaccatttccctaacaaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaggt 17697311  T
Q  423 aaacaaatagaatcccattttatccaagcaannnnnnnagagacctca--caaccccc-------nnnnnnnnnnnngattcgatagaagaaattatacc 513  Q
    |||||||||||||| ||||| ||||||| ||       ||||||||||  ||||||||                   ||||| |||||||||||||||||    
T  17697312 aaacaaatagaatctcatttaatccaagaaatttttttagagacctcaaccaacccccccaaaaaaaaattaaaatagattcaatagaagaaattatacc 17697411  T
Q  514 tgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||  |||||||||||||    
T  17697412 tgcaggtgccttgaaaaaggaaagaaagtaaaccggaagagaggataggacagatttcagaa 17697473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 293 - 575
Target Start/End: Original strand, 17946929 - 17947221
Alignment:
Q  293 gtaccgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctc 392  Q
    |||||||||||||||||||||||||||||| || ||| | |||| |||||||||||| |||||||||||| | |||||||||||||||||||||||||||    
T  17946929 gtaccgtgcctttaagacacgataccacaagccttctttgtcaatcaacaacctccaacaccatttccctaacaaagataaattaaattcacctaacctc 17947028  T
Q  393 cgcacccccaaaccacctcgattcacaggtaaacaaatagaatcccattttatccaagcaannnnnnnagagacctcacaaccccc----------nnnn 482  Q
    | | ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||       ||||||||||||||||||                  
T  17947029 cacccccccaaaccacctcgattcataggtaaacaaatagaatcccatttaatctaagcaatttttttagagacctcacaacccccccaattttttttaa 17947128  T
Q  483 nnnnnnnngattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
            ||||| ||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||  ||| |||||||||    
T  17947129 aaaaaatagattcaatagaagaaattatacctgcaggtgccatgaaaaaggaaagaaagtaaaccggaagagaggatatgacatatttcagaa 17947221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 300 - 453
Target Start/End: Original strand, 9195638 - 9195791
Alignment:
Q  300 gcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcaccc 399  Q
    |||||||| || || |||||||| || ||  ||||||||||||||||||| ||||| |||||| | |||| |||||||||||| |||| |||||  |||     
T  9195638 gcctttaaaactcggtaccacaacccttccttatcaaccaacaacctccatcaccacttccctaacaaaggtaaattaaattcccctagcctccaaacct 9195737  T
Q  400 ccaaaccacctcgattcacaggtaaacaaatagaatcccattttatccaagcaa 453  Q
    |||||||||| |||| ||||| ||||||||| | |||||| |||||||||||||    
T  9195738 ccaaaccaccacgatccacagataaacaaattgtatcccaatttatccaagcaa 9195791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 300 - 453
Target Start/End: Original strand, 20252664 - 20252817
Alignment:
Q  300 gcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcaccc 399  Q
    ||||||| ||||||||||||||| || ||  |||| ||||||| |||||| ||||| |||||  |||| || ||||||||||| ||||||||||| ||||    
T  20252664 gcctttaggacacgataccacaacccttccttatctaccaacatcctccaacaccacttccccaataacgacaaattaaattcccctaacctccgaaccc 20252763  T
Q  400 ccaaaccacctcgattcacaggtaaacaaatagaatcccattttatccaagcaa 453  Q
    |||||||||| | ||||| |||||| || | | |||||||||| ||||||||||    
T  20252764 ccaaaccaccactattcaaaggtaagcacacaaaatcccatttaatccaagcaa 20252817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 491 - 560
Target Start/End: Complemental strand, 21823956 - 21823887
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggata 560  Q
    |||||||||||||| || ||||||| ||| | ||||||||||||||||||||||||||| ||||||||||    
T  21823956 gattcgatagaagagatgatacctgtaggggccttgaagaaggaaagaaagtaaaccgggagagaggata 21823887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 491 - 553
Target Start/End: Complemental strand, 11979026 - 11978964
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaaga 553  Q
    |||||||||||||||||||||| ||  |||| | |||||||||||||||||||||||||||||    
T  11979026 gattcgatagaagaaattatacatgtgggtgccatgaagaaggaaagaaagtaaaccggaaga 11978964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 441
Target Start/End: Complemental strand, 23256095 - 23255955
Alignment:
Q  300 gcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcaccc 399  Q
    |||||||| || | |||||| || || ||| ||||||||||||||||||| |||||||| ||| ||||  | | ||||||||| | ||||||||  ||||    
T  23256095 gcctttaacaccctataccataacccctctttatcaaccaacaacctccaacaccatttacctaataagca-acattaaattcccgtaacctcctaaccc 23255997  T
Q  400 ccaaaccacctcgattcacaggtaaacaaatagaatcccatt 441  Q
    |||| |||||  ||| ||||||||| || |||||||||||||    
T  23255996 ccaatccaccatgatccacaggtaatcacatagaatcccatt 23255955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 336 - 448
Target Start/End: Complemental strand, 21824121 - 21824009
Alignment:
Q  336 accaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaggtaaacaaatagaat 435  Q
    |||| ||||||||| |||||||| ||| ||||||| | |||||| || |||||| |||| ||||| |||| ||| ||| ||| |||||||| || |||||    
T  21824121 accaccaacctccaacaccatttacctaataaagacagattaaaatcccctaacttccgaacccctaaactaccacgactcaaaggtaaaccaacagaat 21824022  T
Q  436 cccattttatcca 448  Q
    ||||||| |||||    
T  21824021 cccatttaatcca 21824009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 9195515 - 9195588
Alignment:
Q  191 ttatcatcaaaccaattacctactcctgatccgatcccttccctcaccttacacatcattctccaccaaccaga 264  Q
    ||||||||||||||| | |||||||| ||||| | ||||||||| |||| ||||||||| |||||||| |||||    
T  9195515 ttatcatcaaaccaacttcctactcccgatcccaccccttccctgacctgacacatcatcctccaccacccaga 9195588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 553
Target Start/End: Original strand, 6023640 - 6023702
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaaga 553  Q
    ||||| |||||||||| ||||||| |||| | |||||| |||||||||| |||||||||||||    
T  6023640 gattcaatagaagaaaatatacctacaggggccttgaaaaaggaaagaatgtaaaccggaaga 6023702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 558
Target Start/End: Complemental strand, 20427571 - 20427509
Alignment:
Q  497 atagaagaaattatacctgcaggt-gtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    |||||||||||||||| ||| ||  | ||||||||||||||||||||||| ||||||||||||    
T  20427571 atagaagaaattatacatgcggggagccttgaagaaggaaagaaagtaaatcggaagagagga 20427509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 551
Target Start/End: Complemental strand, 4634898 - 4634838
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaa 551  Q
    ||||| || ||||||||||||  || ||||| ||||||||||||||||||||||| |||||    
T  4634898 gattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaatcggaa 4634838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 575
Target Start/End: Original strand, 36420497 - 36420581
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||| ||||| |||||||||||||| || |  ||||| ||||||||||||||||| ||||  || || | ||||||||||||||    
T  36420497 gattcaatagaggaaattatacctgcgggggctttgaaaaaggaaagaaagtaaacaggaatggaagacagaacagatttcagaa 36420581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 575
Target Start/End: Complemental strand, 41768248 - 41768164
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||| ||||| ||||||||| ||| ||| |  ||||| ||||||| ||||||||||||||||||||| |  ||||| |||||||    
T  41768248 gattcaatagaggaaattatatctgtaggggctttgaaaaaggaaataaagtaaaccggaagagaggacaagacagacttcagaa 41768164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 26370293 - 26370360
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||| |||||  |||| |||||||| || |  |||||||||||||||||||| ||||||||||||||    
T  26370293 gattcaatagagtaaatgatacctgcgggagctttgaagaaggaaagaaagtagaccggaagagagga 26370360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 17946855 - 17946892
Alignment:
Q  137 tttatcggtccaaaagaaagtgctactaccatttccta 174  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  17946855 tttatcagtccaaaagaaagtactactaccatttccta 17946892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 378
Target Start/End: Original strand, 21270996 - 21271077
Alignment:
Q  297 cgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaa 378  Q
    ||||||||||| |||||||| ||||| |  ||  ||||||||||||||||||| ||||| || | | | |||||||||||||    
T  21270996 cgtgcctttaacacacgatagcacaacctctccttatcaaccaacaacctccaacaccactttcttaacaaagataaattaa 21271077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 30509582 - 30509533
Alignment:
Q  313 gataccacaaaccatctatatcaaccaacaacctccagcaccatttccct 362  Q
    |||||||||| |||||| |||| || ||||||||||| ||||||||||||    
T  30509582 gataccacaagccatctctatctactaacaacctccaacaccatttccct 30509533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 30549922 - 30549873
Alignment:
Q  313 gataccacaaaccatctatatcaaccaacaacctccagcaccatttccct 362  Q
    |||||||||| |||||| |||| || ||||||||||| ||||||||||||    
T  30549922 gataccacaagccatctctatctactaacaacctccaacaccatttccct 30549873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 556
Target Start/End: Complemental strand, 43463741 - 43463676
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagag 556  Q
    ||||| |||||||||||||||| || ||| |  ||||| ||| ||||||||||||||||| |||||    
T  43463741 gattcaatagaagaaattatacatgtaggggctttgaaaaagaaaagaaagtaaaccggaggagag 43463676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 379
Target Start/End: Original strand, 6023430 - 6023518
Alignment:
Q  291 ccgtaccgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaa 379  Q
    |||||||| || || || ||||| ||||||||||| ||| | ||||| | || ||||||||||||||| ||   |||||||||||||||    
T  6023430 ccgtaccgagctttcaaaacacggtaccacaaaccctctttgtcaactatcatcctccagcaccatttacccattaaagataaattaaa 6023518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 425 - 453
Target Start/End: Original strand, 10460885 - 10460913
Alignment:
Q  425 acaaatagaatcccattttatccaagcaa 453  Q
    |||||||||||||||||||||||||||||    
T  10460885 acaaatagaatcccattttatccaagcaa 10460913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 10486454 - 10486406
Alignment:
Q  314 ataccacaaaccatctatatcaaccaacaacctccagcaccatttccct 362  Q
    |||||||||||||||||| || ||||||| || ||| ||||||||||||    
T  10486454 ataccacaaaccatctatgtccaccaacatccgccaacaccatttccct 10486406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 543
Target Start/End: Original strand, 41914551 - 41914603
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagta 543  Q
    ||||| ||||||||||||||||||||||| |  |||||  |||||||||||||    
T  41914551 gattcaatagaagaaattatacctgcaggggctttgaaataggaaagaaagta 41914603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 170; Significance: 6e-91; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 137 - 560
Target Start/End: Original strand, 8305594 - 8306037
Alignment:
Q  137 tttatcggtccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatcaaaccaattacctactcctgatccgatcccttccctca 236  Q
    |||||| |||||||||||||| ||||| |||||||||||| |  |||||||| |||| |||||||||| ||| ||||||||||||| | ||| |||||||    
T  8305594 tttatcagtccaaaagaaagtactactgccatttcctacctc--cctcctaacattaccatcaaaccagttatctactcctgatcccaccccatccctca 8305691  T
Q  237 ccttacacatcattctccaccaaccagacacctctctccctccttcctgaatt-------------cccgtaccgtgcctttaagacacgataccacaaa 323  Q
    |||| |||| ||| ||||||||||||||| | |||||||||||||||||||||             |||||||||||||||||| || |||||||||||     
T  8305692 ccttgcacaacatactccaccaaccagacgcttctctccctccttcctgaattgaccaccaacctccccgtaccgtgcctttaaaacgcgataccacaat 8305791  T
Q  324 ccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaggta 423  Q
    || ||| | |||| |||||||||||| |||||||| ||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8305792 ccttctttgtcaatcaacaacctccaacaccattttcctaacaaagataaattaaattcacctaacatccgcacccccaaaccacctcgattcacaggta 8305891  T
Q  424 aacaaatagaatcccattttatccaagcaannnnnnnagagacctcacaaccccc---------nnnnnnnnnnnngattcgatagaagaaattatacct 514  Q
    ||||||||  ||||||||| ||||||||||       ||||||||||||||||||                     ||||||||||||||||||||||||    
T  8305892 aacaaataatatcccatttaatccaagcaatttttttagagacctcacaacccccccaattttttttttaaagttcgattcgatagaagaaattatacct 8305991  T
Q  515 gcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggata 560  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||    
T  8305992 gcaggtgccttgaagaaggaaagaaaataaaccggaagagaggata 8306037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 137 - 575
Target Start/End: Complemental strand, 21312892 - 21312433
Alignment:
Q  137 tttatcggtccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatcaaaccaattacctactcctgatccgatcccttccctca 236  Q
    |||||| ||||||||||||||  ||||||||||||||||| |  |||||||| |||| |||||||||| ||||||||||| ||||| |  || |||||||    
T  21312892 tttatcagtccaaaagaaagtattactaccatttcctacctc--cctcctaacattaacatcaaaccagttacctactcccgatcctacgccatccctca 21312795  T
Q  237 ccttacacatcattctccaccaaccagacacctctctccctccttcctgaattc--------------ccgtaccgtgcctttaagacacgataccacaa 322  Q
    ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||              | ||||||||||||||||||||||||||||||    
T  21312794 ccttacacaacatacgccaccaaccagacacctctctccctccttcctgaattctaccacctacctccctgtaccgtgcctttaagacacgataccacaa 21312695  T
Q  323 accatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaggt 422  Q
     || ||| | |||  |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21312694 gccttctttctcattcaacaacctccaacaccatttccctaacaaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaagt 21312595  T
Q  423 aaacaaatagaatcccattttatccaagcaannnnnnnagagacctcacaaccccc---------nnnnnnnnnnnngattcgatagaagaaattatacc 513  Q
    ||||||||||||||||||||  |||||||||       ||| ||||||||||||||                     ||||| |||||||||||||||||    
T  21312594 aaacaaatagaatcccatttagtccaagcaatttttttagaaacctcacaaccccccaaatttttttttaaaaaatagattcaatagaagaaattatacc 21312495  T
Q  514 tgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    |||||| | |||||| ||||||||||| ||||||| |||||||||||  |||||||||||||    
T  21312494 tgcaggcgccttgaaaaaggaaagaaaataaaccgaaagagaggataggacagatttcagaa 21312433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 491 - 558
Target Start/End: Complemental strand, 25109030 - 25108963
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||||||||||||||||||||||||||| |  ||||| |||||||||||||||||||||||||||||    
T  25109030 gattcgatagaagaaattatacctgcaggggctttgaaaaaggaaagaaagtaaaccggaagagagga 25108963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 491 - 556
Target Start/End: Original strand, 24425534 - 24425599
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagag 556  Q
    ||||||||||| |||||||||||||| || | ||||||||||||||||||||||||||||||||||    
T  24425534 gattcgatagaggaaattatacctgcgggagccttgaagaaggaaagaaagtaaaccggaagagag 24425599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 491 - 575
Target Start/End: Original strand, 39920663 - 39920747
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||| ||||| ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| ||||  ||||| |||||||    
T  39920663 gattcaatagaggaaatgatacctgtaggtgccttgaagaaggaaagaaagtaaaccggaagagatgataggacagacttcagaa 39920747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 491 - 575
Target Start/End: Complemental strand, 42451987 - 42451903
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||| ||||||||||||||||||||||| |  ||||| |||||||||||||||||||| |||||||| |  |||||||||||||    
T  42451987 gattcaatagaagaaattatacctgcaggagctttgaaaaaggaaagaaagtaaaccggtagagaggacaagacagatttcagaa 42451903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 491 - 572
Target Start/End: Original strand, 1010757 - 1010838
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttca 572  Q
    |||||||||||||||||||||  ||| || | ||||||||||||||||||||||||||||||||| || |  ||||||||||    
T  1010757 gattcgatagaagaaattatatttgcgggggccttgaagaaggaaagaaagtaaaccggaagagatgacatgacagatttca 1010838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 3774820 - 3774887
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    |||| ||||||||||||||||||||| || | |||||| ||||||||||||||||| ||||| |||||    
T  3774820 gatttgatagaagaaattatacctgcgggagccttgaaaaaggaaagaaagtaaactggaagcgagga 3774887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 294 - 449
Target Start/End: Original strand, 20888138 - 20888285
Alignment:
Q  294 taccgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctcc 393  Q
    ||||| |||||||  ||||| ||||||||||| ||  |||| |||| ||||||||| ||||| |||||| |||| || ||||||||||| ||||          
T  20888138 taccgagcctttattacacggtaccacaaaccttccttatctaccatcaacctccaacaccacttccctaataacgacaaattaaattctccta------ 20888231  T
Q  394 gcacccccaaaccacctcgattcacaggtaaacaaatagaatcccattttatccaa 449  Q
      ||||||||||||||| |||||||  ||||||| | | ||||| |||||||||||    
T  20888232 --acccccaaaccaccttgattcactagtaaacatacaaaatcctattttatccaa 20888285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 491 - 560
Target Start/End: Original strand, 8445606 - 8445675
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggata 560  Q
    ||||| || |||||||| ||||||| ||| |  |||||||||||||||||||| ||||||||||||||||    
T  8445606 gattcaatggaagaaatgatacctgaaggagctttgaagaaggaaagaaagtagaccggaagagaggata 8445675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 491 - 552
Target Start/End: Original strand, 25320604 - 25320665
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaag 552  Q
    |||||||||  ||||||||||||||| || | |||||| |||||||||||||||||||||||    
T  25320604 gattcgataagagaaattatacctgctggagccttgaaaaaggaaagaaagtaaaccggaag 25320665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 497 - 572
Target Start/End: Complemental strand, 1682244 - 1682169
Alignment:
Q  497 atagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttca 572  Q
    |||||||||||||||||| |  | | ||||||||||||||||||||||| ||| |||||||| |  ||||||||||    
T  1682244 atagaagaaattatacctacgagagccttgaagaaggaaagaaagtaaatcggcagagaggacatgacagatttca 1682169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 23448162 - 23448220
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccgg 549  Q
    |||||||||  ||||||||||| |||||| | |||||| ||||||||||||||||||||    
T  23448162 gattcgataagagaaattatacatgcaggagccttgaaaaaggaaagaaagtaaaccgg 23448220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 545
Target Start/End: Original strand, 29978006 - 29978060
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaa 545  Q
    ||||| |||||||||||||||| ||  ||||||||||||||| ||||||||||||    
T  29978006 gattcaatagaagaaattatacatgtgggtgtcttgaagaagaaaagaaagtaaa 29978060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 138 - 282
Target Start/End: Original strand, 20887970 - 20888112
Alignment:
Q  138 ttatcggtccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatcaaaccaattacctactcctgatccgatcccttccctcac 237  Q
    ||||| |||||||| |||||||||| ||||||  |||||||  |  |||||||||||||||||||||| | ||||| ||    ||||  || ||||| ||    
T  20887970 ttatcagtccaaaacaaagtgctacgaccattatctaccac--ctgcctaatattatcatcaaaccaactgcctacacccatcccgactccctcccttac 20888067  T
Q  238 cttacacatcattctccaccaaccagacacctctctccctccttc 282  Q
     |  | |||||| ||||||||||||||||| | ||||||||||||    
T  20888068 gtgtcccatcatcctccaccaaccagacacatttctccctccttc 20888112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 336 - 453
Target Start/End: Original strand, 39920498 - 39920615
Alignment:
Q  336 accaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaggtaaacaaatagaat 435  Q
    |||||||||||||| ||||| || ||| | | ||| | |||||| || |||||| |||| ||||| ||||||||| || ||| ||||||||||| ||| |    
T  39920498 accaacaacctccaacaccacttacctaagagagacagattaaactcccctaacttccgaacccctaaaccaccttgactcataggtaaacaaacagagt 39920597  T
Q  436 cccattttatccaagcaa 453  Q
    |||| |||| ||| ||||    
T  39920598 cccactttacccatgcaa 39920615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 575
Target Start/End: Original strand, 31462191 - 31462275
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||| |||||||||||||||| |||||  |  ||||| ||| |||||||||| |||||||||||||| |  |||||||| ||||    
T  31462191 gattcaatagaagaaattatacatgcagaagctttgaaaaagtaaagaaagtagaccggaagagaggacatgacagattttagaa 31462275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 13091138 - 13091205
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||| ||||||||||| |||| |||  | |  |||||||||||||||||||| ||||||||||||||    
T  13091138 gattcaatagaagaaatgatacgtgcgagagctttgaagaaggaaagaaagtagaccggaagagagga 13091205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 20888347 - 20888414
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||||||||| || ||||||| || |||   ||||||||||||||||||||| ||||||||| ||||    
T  20888347 gattcgatagaggagattatacttgtaggcaccttgaagaaggaaagaaagtacaccggaagacagga 20888414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 523 - 557
Target Start/End: Original strand, 15014326 - 15014360
Alignment:
Q  523 cttgaagaaggaaagaaagtaaaccggaagagagg 557  Q
    |||||||||||||||||||||||||| ||||||||    
T  15014326 cttgaagaaggaaagaaagtaaaccgcaagagagg 15014360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 382
Target Start/End: Original strand, 25193692 - 25193762
Alignment:
Q  312 cgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattc 382  Q
    |||||||| || |||||| |||| ||||||| ||||||||||||||| ||| ||||||   ||||||||||    
T  25193692 cgataccagaacccatctctatccaccaacatcctccagcaccattttcctaataaagcacaattaaattc 25193762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 393
Target Start/End: Complemental strand, 442435 - 442342
Alignment:
Q  300 gcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctcc 393  Q
    ||||||||||| |||||||| || || ||  |||| || | || ||||||||||||||| |||   ||||||||||||||  ||||||||||||    
T  442435 gcctttaagactcgataccataacccctccttatctactagcatcctccagcaccattttcctaccaaagataaattaaacccacctaacctcc 442342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 572
Target Start/End: Complemental strand, 25720104 - 25720023
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttca 572  Q
    ||||| |||||||||||||||  || ||| |  ||||| ||||||||||||||||||||||  ||||| |  ||||||||||    
T  25720104 gattcaatagaagaaattatatttgtaggggctttgaaaaaggaaagaaagtaaaccggaatggaggacaagacagatttca 25720023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 5e-82; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 145 - 575
Target Start/End: Original strand, 2855102 - 2855553
Alignment:
Q  145 tccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatcaaaccaattacctactcctgatccgatcccttccctcaccttacac 244  Q
    ||||||||||||| |||||||||||||| ||| |  |||| ||| |||| |||||||||| ||||||||||| || || |  |||||||||||||| |||    
T  2855102 tccaaaagaaagtactactaccatttccaacctc--cctcataacattaacatcaaaccagttacctactcccgagcctactccttccctcaccttgcac 2855199  T
Q  245 atcattctccaccaaccagacacctctctccctccttcctgaattc--------------ccgtaccgtgcctttaagacacgataccacaaaccatcta 330  Q
    | ||| ||||||||||| ||||| ||||||||||||||||||||||              || ||| ||||||||||||||||||||||||| || |||     
T  2855200 aacatactccaccaaccggacacatctctccctccttcctgaattctaccaccaacctccccatactgtgcctttaagacacgataccacaagccttctt 2855299  T
Q  331 tatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaggtaaacaaat 430  Q
    | |||| |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2855300 tgtcaatcaacaacctccaacaccatttccctaacaaagataaattaaattcacctaacctccgcacccccaaaccaccgcgattcacaggtaaacaaat 2855399  T
Q  431 agaatcccattttatccaagcaannnnnnnagagacctcacaaccccc---------nnnnnnnnnnnngattcgatagaagaaattatacctgcaggtg 521  Q
    |||||||||||| ||||||||||       ||||||||||||||||||                     ||||| ||||||||||||||||||||| |||    
T  2855400 agaatcccatttaatccaagcaatttttttagagacctcacaacccccgcaaaaaaaaatttaaaaatagattcaatagaagaaattatacctgcaagtg 2855499  T
Q  522 tcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
     ||||||  |||||||||||||||||||||||||||| |   ||||||||||||    
T  2855500 ccttgaaataggaaagaaagtaaaccggaagagaggacagggcagatttcagaa 2855553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 294 - 453
Target Start/End: Complemental strand, 5194485 - 5194326
Alignment:
Q  294 taccgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctcc 393  Q
    |||||||||||||| |||||||||||||| || ||  |||| |||  ||||||||| ||||| |||||| |||||||||| |||||||| ||||||||||    
T  5194485 taccgtgcctttaaaacacgataccacaacccttccttatccaccttcaacctccaacaccacttccctaataaagataagttaaattctcctaacctcc 5194386  T
Q  394 gcacccccaaaccacctcgattcacaggtaaacaaatagaatcccattttatccaagcaa 453  Q
    | | ||||||||||||   ||||||||||||||| | |||||||||||| ||||||||||    
T  5194385 gaaaccccaaaccaccattattcacaggtaaacacacagaatcccatttgatccaagcaa 5194326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 138 - 420
Target Start/End: Complemental strand, 29359525 - 29359233
Alignment:
Q  138 ttatcggtccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatcaaaccaattacctactcctgatccgatcccttccctcac 237  Q
    ||||| ||||||||||||||| ||| |||||| ||||||||  || |||||||||||||||||||||| | ||||| || |  || | ||| ||||||||    
T  29359525 ttatcagtccaaaagaaagtgttacgaccattacctaccac--ccgcctaatattatcatcaaaccaacttcctacacccgtcccaaccccctccctcac 29359428  T
Q  238 cttacacatcattctccaccaaccagacacctctctccctccttcctgaatt--------------cccgtaccgtgcctttaagacacgataccacaaa 323  Q
     | ||||| |||  |||||||||||||||| | |||||||||||||||||||              ||  || |||||||||||||| |||||||||||     
T  29359427 gtgacacaacatcgtccaccaaccagacacatttctccctccttcctgaattcggccaccaacctcccaatatcgtgcctttaagacgcgataccacaat 29359328  T
Q  324 ccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacag 420  Q
    | |||   |||||||||||||||||| ||||| |||||| ||||||| ||||||||||| |||||||| || |  |||||||||||| |||||||||    
T  29359327 caatcctcatcaaccaacaacctccaacaccacttccctaataaagacaaattaaattctcctaaccttcgaa--cccaaaccaccttgattcacag 29359233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 4104057 - 4104181
Alignment:
Q  138 ttatcggtccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatcaaaccaattacctactcctgatccgatcccttccctcac 237  Q
    ||||| ||||||||  ||||| ||| |||||| ||||| ||  |||||||   ||||||||||||||| | |||||||||||||| | ||||||||||||    
T  4104057 ttatcagtccaaaaataagtgttacgaccattgcctactac--cctcctagagttatcatcaaaccaacttcctactcctgatcccaccccttccctcac 4104154  T
Q  238 cttacacatcattctccaccaaccaga 264  Q
    || ||||||||| |||||||| |||||    
T  4104155 ctgacacatcatcctccaccacccaga 4104181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 294 - 453
Target Start/End: Complemental strand, 18488654 - 18488495
Alignment:
Q  294 taccgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctcc 393  Q
    ||||| |||||||| || |  ||||||| |||||   |||| |||||||||||||| |||||||| |||  |||||| | |||||| ||  ||||| |||    
T  18488654 taccgagcctttaaaactctgtaccacagaccattcttatccaccaacaacctccaacaccatttacctattaaagacagattaaaatcctctaacttcc 18488555  T
Q  394 gcacccccaaaccacctcgattcacaggtaaacaaatagaatcccattttatccaagcaa 453  Q
    | ||||| |||||||| ||| ||| ||||||||||| |||||||||||| ||||| ||||    
T  18488554 gaacccctaaaccaccacgactcaaaggtaaacaaacagaatcccatttaatccaggcaa 18488495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 342 - 449
Target Start/End: Complemental strand, 20209160 - 20209053
Alignment:
Q  342 aacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaggtaaacaaatagaatcccatt 441  Q
    |||||||| |||||||||||| | |||| ||  |||||||| || | |||||| ||||||| |||||| | ||||||| ||||||||||| |||||||||    
T  20209160 aacctccaacaccatttccctaacaaagctactttaaattcccccagcctccgaacccccagaccaccacaattcacaagtaaacaaataaaatcccatt 20209061  T
Q  442 ttatccaa 449  Q
    ||||||||    
T  20209060 ttatccaa 20209053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 342 - 449
Target Start/End: Complemental strand, 22103183 - 22103076
Alignment:
Q  342 aacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaggtaaacaaatagaatcccatt 441  Q
    |||||||| |||||||||||| | |||| ||  |||||||| || | |||||| ||||||| |||||| | ||||||| ||||||||||| |||||||||    
T  22103183 aacctccaacaccatttccctaacaaagctactttaaattcccccagcctccgaacccccagaccaccacaattcacaagtaaacaaataaaatcccatt 22103084  T
Q  442 ttatccaa 449  Q
    ||||||||    
T  22103083 ttatccaa 22103076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 491 - 560
Target Start/End: Original strand, 16478954 - 16479023
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggata 560  Q
    |||||||||||||| || ||||||| ||| | ||||||||||||||||||||||||||| ||||||||||    
T  16478954 gattcgatagaagagatgatacctgtaggggccttgaagaaggaaagaaagtaaaccgggagagaggata 16479023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 491 - 580
Target Start/End: Complemental strand, 18488447 - 18488358
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaataatc 580  Q
    ||||||||||| || || ||||||| ||| | ||||||||||||||||||||||||||| ||||||||||  ||||| ||||||| ||||    
T  18488447 gattcgatagaggagatgatacctgtaggggccttgaagaaggaaagaaagtaaaccgggagagaggataggacagacttcagaagaatc 18488358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 498 - 580
Target Start/End: Complemental strand, 12334965 - 12334883
Alignment:
Q  498 tagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaataatc 580  Q
    |||||||||||||||||   |||| ||||||||||||||||||||||||||||||||| || |  ||| ||||||||| ||||    
T  12334965 tagaagaaattatacctatgggtgccttgaagaaggaaagaaagtaaaccggaagagacgacaagacaaatttcagaagaatc 12334883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 491 - 575
Target Start/End: Original strand, 12608234 - 12608317
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||||||| | ||||||||||||| ||||| |||||| |||||||||||||||||| |||||||||| |  ||||| |||||||    
T  12608234 gattcgataaaggaaattatacctgtaggtgccttgaaaaaggaaagaaagtaaacc-gaagagaggacaggacagacttcagaa 12608317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 336 - 448
Target Start/End: Original strand, 16478789 - 16478901
Alignment:
Q  336 accaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaggtaaacaaatagaat 435  Q
    |||| ||||||||| |||||||| ||| ||||||| | |||||| || |||||| |||| ||||| |||| ||| ||| ||| |||||||| || |||||    
T  16478789 accaccaacctccaacaccatttacctaataaagacagattaaaatcccctaacttccgaacccctaaactaccacgactcaaaggtaaaccaacagaat 16478888  T
Q  436 cccattttatcca 448  Q
    ||||||| |||||    
T  16478889 cccatttaatcca 16478901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 3298024 - 3298091
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    |||| |||||| |||||||||||| || | || ||||| |||||||||||||||||||||||||||||    
T  3298024 gatttgatagaggaaattatacctacatgagttttgaaaaaggaaagaaagtaaaccggaagagagga 3298091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 12913608 - 12913675
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||| ||||||||||| |||||||| || |  |||||||||||||||||||| ||||||||||||||    
T  12913608 gattcaatagaagaaatgatacctgcgggagctttgaagaaggaaagaaagtagaccggaagagagga 12913675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 491 - 560
Target Start/End: Original strand, 17738950 - 17739019
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggata 560  Q
    |||||||||||||||||||||| || ||| |  ||||| ||||||||||||||||  |||||||||||||    
T  17738950 gattcgatagaagaaattatacatgtaggggctttgaaaaaggaaagaaagtaaaagggaagagaggata 17739019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 555
Target Start/End: Original strand, 15171441 - 15171505
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    |||||||||||||||||||||| ||  || | |||||||||  ||||||||||||||||||||||    
T  15171441 gattcgatagaagaaattatacatgtgggggccttgaagaacaaaagaaagtaaaccggaagaga 15171505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 555
Target Start/End: Original strand, 15180213 - 15180277
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    |||||||||||||||||||||| ||  || | |||||||||  ||||||||||||||||||||||    
T  15180213 gattcgatagaagaaattatacatgtgggggccttgaagaacaaaagaaagtaaaccggaagaga 15180277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 9857457 - 9857524
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||| ||||||||||||||||||||| |    ||||| |||||||||||||||||||| ||||||||    
T  9857457 gattcaatagaagaaattatacctgcaaggactttgaaaaaggaaagaaagtaaaccggtagagagga 9857524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 492 - 575
Target Start/End: Original strand, 19249778 - 19249861
Alignment:
Q  492 attcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    |||| |||| ||||||||||| ||| || |  ||||| ||||||||||||||||||| ||||||||| || || ||||||||||    
T  19249778 attcaatagtagaaattatacatgcgggggctttgaaaaaggaaagaaagtaaaccgaaagagaggacacgacggatttcagaa 19249861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 491 - 552
Target Start/End: Complemental strand, 15471972 - 15471911
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaag 552  Q
    |||||||||||||||||||||| ||  || | |||||||||  |||||||||||||||||||    
T  15471972 gattcgatagaagaaattatacatgtgggggccttgaagaacaaaagaaagtaaaccggaag 15471911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 575
Target Start/End: Original strand, 8754271 - 8754355
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||| ||||| ||||| |||||||| || | ||||||||| |||||||| || |||||||||||||| |  ||||| |||||||    
T  8754271 gattcaatagaggaaatgatacctgcgggagccttgaagaaagaaagaaaatagaccggaagagaggacaagacagacttcagaa 8754355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 555
Target Start/End: Original strand, 15161436 - 15161500
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    |||||||||||||||||||||| ||  || | |||||||||  ||||||||||||||| ||||||    
T  15161436 gattcgatagaagaaattatacatgtgggagacttgaagaacaaaagaaagtaaaccgaaagaga 15161500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 453
Target Start/End: Original strand, 12608129 - 12608185
Alignment:
Q  396 acccccaaaccacctcgattcacaggtaaacaaatagaatcccattttatccaagcaa 453  Q
    ||||||||||| |||| ||||| || |||||||||||||| |||||||| ||||||||    
T  12608129 acccccaaacctcctctattcatag-taaacaaatagaattccattttacccaagcaa 12608185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 31292617 - 31292548
Alignment:
Q  292 cgtaccgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccc 361  Q
    |||| ||||| ||||| |||||||||||||| || || ||||| || |||| |||||| |||||||||||    
T  31292617 cgtagcgtgcttttaacacacgataccacaacccctccatatctactaacatcctccaacaccatttccc 31292548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 523 - 551
Target Start/End: Complemental strand, 6345496 - 6345468
Alignment:
Q  523 cttgaagaaggaaagaaagtaaaccggaa 551  Q
    |||||||||||||||||||||||||||||    
T  6345496 cttgaagaaggaaagaaagtaaaccggaa 6345468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 153; Significance: 8e-81; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 137 - 478
Target Start/End: Complemental strand, 27293338 - 27292985
Alignment:
Q  137 tttatcggtccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatcaaaccaattacctactcctgatccgatcccttccctca 236  Q
    |||||| |||||||||||||| |||||||||||||||||| |  |||||||| |||| |||||| ||| ||||||||||| || || |  || |||||||    
T  27293338 tttatcagtccaaaagaaagtactactaccatttcctacctc--cctcctaacattaacatcaatccagttacctactcccgagcctactccatccctca 27293241  T
Q  237 ccttacacatcattctccaccaaccagacacctctctccctccttcctgaattc--------------ccgtaccgtgcctttaagacacgataccacaa 322  Q
    |||| |||| ||| ||||||||||| ||| |||||||||||||||| |||||||              ||||||||||||||||||||| ||||||||||    
T  27293240 ccttgcacaacatactccaccaaccggacgcctctctccctccttcatgaattctacctccaacctccccgtaccgtgcctttaagacatgataccacaa 27293141  T
Q  323 accatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaggt 422  Q
     |  ||| | |||| |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27293140 gcattctttgtcaatcaacaacctccaacaccatttccctaacaaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaggt 27293041  T
Q  423 aaacaaatagaatcccattttatccaagcaannnnnnnagagacctcacaaccccc 478  Q
    |||||||||||||||||||| || |||||||       ||||||||||||||||||    
T  27293040 aaacaaatagaatcccatttaattcaagcaatttttttagagacctcacaaccccc 27292985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 138 - 453
Target Start/End: Complemental strand, 8751566 - 8751244
Alignment:
Q  138 ttatcggtccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatcaaaccaattacctactcctgatccgatc-ccttccctca 236  Q
    ||||| ||||||||||||||||||| |||||| ||||||||  || |||||||||||| ||||||||| | ||||| ||  |||| | | || ||||| |    
T  8751566 ttatcagtccaaaagaaagtgctacgaccattacctaccac--ccgcctaatattatcctcaaaccaactgcctacaccc-atcccaactccctccctta 8751470  T
Q  237 ccttacacatcattctccaccaaccagacacctctctccctccttcctgaatt---------cccgtaccgtgcctttaagacacgataccacaaaccat 327  Q
    | |  | ||| || ||||||||||||||||| | |||||||||||| ||||||         ||| ||||| |||||||| ||||| ||||||| ||| |    
T  8751469 cgtgccccattatcctccaccaaccagacacatatctccctccttcttgaatttccaacttccccataccgagcctttaatacacggtaccacagacctt 8751370  T
Q  328 ctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaggtaaaca 427  Q
    |  |||| |||| ||||||||| ||||| |||||| ||||||| |||||||||||  |||||||||  ||||||||||||||| |||||| |||||||||    
T  8751369 ccttatctaccatcaacctccaacaccacttccctaataaagacaaattaaattcttctaacctcctaacccccaaaccaccttgattcataggtaaaca 8751270  T
Q  428 aatagaatcccattttatccaagcaa 453  Q
     |||||||||||||||||||||||||    
T  8751269 tatagaatcccattttatccaagcaa 8751244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 138 - 290
Target Start/End: Complemental strand, 38650389 - 38650239
Alignment:
Q  138 ttatcggtccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatcaaaccaattacctactcctgatccgatcccttccctcac 237  Q
    ||||| ||||||||||||||||||||| |||||||||||||  ||| |||||||||||||| |||||| || ||||||||||||| | ||||||||||||    
T  38650389 ttatcagtccaaaagaaagtgctactatcatttcctaccac--ccttctaatattatcatcgaaccaactatctactcctgatccaaccccttccctcac 38650292  T
Q  238 cttacacatcattctccaccaaccagacacctctctccctccttcctgaattc 290  Q
     || || ||||| ||||||||||||||||| |||||||||||||||| |||||    
T  38650291 attgcatatcatcctccaccaaccagacacatctctccctccttcctaaattc 38650239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 300 - 478
Target Start/End: Complemental strand, 6458018 - 6457840
Alignment:
Q  300 gcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcaccc 399  Q
    |||||||| |||| ||||||||| || ||  |||| ||||||| |||| | ||||| || ||| ||||||||||||||||||| ||||||||||| ||||    
T  6458018 gcctttaaaacacaataccacaacccttccttatcgaccaacagcctctaacaccactttcctaataaagataaattaaattcccctaacctccgaaccc 6457919  T
Q  400 ccaaaccacctcgattcacaggtaaacaaatagaatcccattttatccaagcaannnnnnnagagacctcacaaccccc 478  Q
    |||| ||||| |||| |||| |||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  6457918 ccaagccaccacgatccacaagtaaacaaatagaatcccattttatccaagcaattcttttagagacctcacaaccccc 6457840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 294 - 453
Target Start/End: Complemental strand, 641854 - 641695
Alignment:
Q  294 taccgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctcc 393  Q
    ||||| |||||||| ||| |||||||||| || ||  |||| |||  ||||||||||||||| |||||| ||| ||||||||||||||||| ||||||||    
T  641854 taccgagcctttaaaacatgataccacaacccttccttatccaccttcaacctccagcaccacttccctaatagagataaattaaattcacttaacctcc 641755  T
Q  394 gcacccccaaaccacctcgattcacaggtaaacaaatagaatcccattttatccaagcaa 453  Q
    | ||||||||||||||   ||||||||||||||| | | |||||||||| ||||||||||    
T  641754 gaacccccaaaccaccattattcacaggtaaacacacataatcccatttaatccaagcaa 641695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 497 - 575
Target Start/End: Complemental strand, 27292956 - 27292878
Alignment:
Q  497 atagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |  |||||||||||||    
T  27292956 atagaagaaattatacctgcaggtgccttgaaaaaggaaagaaagtaaaccggaagagaggacatgacagatttcagaa 27292878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 290 - 436
Target Start/End: Complemental strand, 17262334 - 17262188
Alignment:
Q  290 cccgtaccgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaac 389  Q
    ||||||||| |||||||| || || | |||||| || ||  |||| |||||||||||||||||||| |||||| | || |||||||||||||| ||||||    
T  17262334 cccgtaccgggcctttaacactcggtgccacaacccttccttatccaccaacaacctccagcaccacttccctaacaatgataaattaaattcccctaac 17262235  T
Q  390 ctccgcacccccaaaccacctcgattcacaggtaaacaaatagaatc 436  Q
    ||||| || || |||||||| ||| |||  | |||||||||| ||||    
T  17262234 ctccgaactccaaaaccaccacgactcagtgataaacaaataaaatc 17262188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 491 - 580
Target Start/End: Complemental strand, 38430471 - 38430382
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaataatc 580  Q
    |||||||||||||||||||||||||  || | ||||||||||||||||||||||||||||| |||||| |  |||||||| |||| ||||    
T  38430471 gattcgatagaagaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggaacagaggacaagacagatttaagaagaatc 38430382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 491 - 575
Target Start/End: Complemental strand, 8751199 - 8751115
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||||||||| || |||||||||| ||| | |||||||||||||||||||||||||||||||||||| |  ||||| |||||||    
T  8751199 gattcgatagaggagattatacctgtaggcgccttgaagaaggaaagaaagtaaaccggaagagaggacaagacagacttcagaa 8751115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 494 - 570
Target Start/End: Complemental strand, 12463733 - 12463657
Alignment:
Q  494 tcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagattt 570  Q
    ||||| ||||||||||||||||| || | ||||||||||||||||||||||| ||||||||| |||| |||||||||    
T  12463733 tcgatggaagaaattatacctgcgggggccttgaagaaggaaagaaagtaaatcggaagagatgatagaacagattt 12463657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 297 - 444
Target Start/End: Original strand, 22359837 - 22359984
Alignment:
Q  297 cgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgca 396  Q
    ||||||||||| |||||||||||||| || ||| |||| |||  |||||| |||||||| |||| | ||| |||||||| |||||| | ||| ||| | |    
T  22359837 cgtgcctttaaaacacgataccacaatccctctttatctaccttcaaccttcagcaccacttccataatagagataaataaaattctcttaatctctgaa 22359936  T
Q  397 cccccaaaccacctcgattcacaggtaaacaaatagaatcccatttta 444  Q
    |||| |||||||| | ||||||| ||||||| | | ||||||||||||    
T  22359937 cccctaaaccaccgctattcacatgtaaacacacataatcccatttta 22359984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 555
Target Start/End: Complemental strand, 6457809 - 6457745
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    ||||||||||| |||||||||| || ||||| ||||||||| |||||||||||||||||||||||    
T  6457809 gattcgatagaggaaattatacatgtaggtgccttgaagaaagaaagaaagtaaaccggaagaga 6457745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 555
Target Start/End: Original strand, 7288139 - 7288203
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    ||||| |||||||||||||||||||  |||| ||||||||||||||||||||||||| |||||||    
T  7288139 gattcaatagaagaaattatacctgtgggtgccttgaagaaggaaagaaagtaaaccagaagaga 7288203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 17195282 - 17195349
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||| ||||||||||| ||||||||||| |  |||||||||||||||||||| ||||||||||||||    
T  17195282 gattcaatagaagaaatgatacctgcaggagctttgaagaaggaaagaaagtagaccggaagagagga 17195349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 9601540 - 9601598
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccgg 549  Q
    |||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  9601540 gattcgatggaagaaattatacctgtaggggccttgaagaaggaaagaaagtaaaccgg 9601598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 9829111 - 9829169
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccgg 549  Q
    |||||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  9829111 gattcgatggaagaaattatacctgtaggggccttgaagaaggaaagaaagtaaaccgg 9829169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 491 - 573
Target Start/End: Original strand, 48778896 - 48778978
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcag 573  Q
    ||||| |||||||||||||||| ||| || | |||||||||||||||||||||||||||||| || || |  |||||||||||    
T  48778896 gattcaatagaagaaattatacatgcgggagccttgaagaaggaaagaaagtaaaccggaagcgaagacaagacagatttcag 48778978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 491 - 573
Target Start/End: Complemental strand, 641646 - 641564
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcag 573  Q
    ||||| ||||| |||| |||||||| ||||| |||||| |||||||||||||||||||| ||||| || |  |||||||||||    
T  641646 gattcaatagaggaaactatacctgtaggtgccttgaaaaaggaaagaaagtaaaccggtagagaagacatgacagatttcag 641564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 13063152 - 13063094
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccgg 549  Q
    ||||| ||||||||||||||||||||||| |  ||||| ||||||||||||||||||||    
T  13063152 gattcaatagaagaaattatacctgcaggggctttgaaaaaggaaagaaagtaaaccgg 13063094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 499 - 555
Target Start/End: Original strand, 20367902 - 20367958
Alignment:
Q  499 agaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    ||||||||||||||||||  | | |||||||||||||||||||||||| ||||||||    
T  20367902 agaagaaattatacctgcgagggccttgaagaaggaaagaaagtaaactggaagaga 20367958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 13808724 - 13808791
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    |||||||||||||||||||||||||||||    ||||| |||||||||| |||||||| || ||||||    
T  13808724 gattcgatagaagaaattatacctgcagggactttgaaaaaggaaagaacgtaaaccgcaaaagagga 13808791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 491 - 558
Target Start/End: Complemental strand, 38140985 - 38140918
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||| ||||| ||||| |||||||| || |  |||||||||||||||||||| ||||||||||||||    
T  38140985 gattcaatagaggaaatgatacctgcgggagctttgaagaaggaaagaaagtagaccggaagagagga 38140918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 573
Target Start/End: Complemental strand, 44232577 - 44232495
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcag 573  Q
    ||||| |||||| ||||||||| ||  | || ||||||||||||||||||||||||||||||| | || |  |||||||||||    
T  44232577 gattcaatagaaaaaattatacatgtggatgccttgaagaaggaaagaaagtaaaccggaagatacgacatgacagatttcag 44232495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 258
Target Start/End: Complemental strand, 6458186 - 6458074
Alignment:
Q  144 gtccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatcaaaccaattacctactcctgatccgatcccttccctcaccttaca 243  Q
    ||||||||||||||| ||| |||||| |||||  ||||| ||||  |||||||||||||||  | |||||||| | ||| | |||||| || || | |||    
T  6458186 gtccaaaagaaagtgttacgaccattacctac--cacccgcctagaattatcatcaaaccagctccctactcccgttcccaccccttctctaacgtgaca 6458089  T
Q  244 catcattctccacca 258  Q
    |||||| ||||||||    
T  6458088 catcatcctccacca 6458074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 558
Target Start/End: Complemental strand, 19322968 - 19322901
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||| ||||| ||||| |||| ||| || |  |||||||||||||||||||| ||||||||||||||    
T  19322968 gattcaatagaggaaatgatacatgcgggagctttgaagaaggaaagaaagtagaccggaagagagga 19322901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 558
Target Start/End: Complemental strand, 9967646 - 9967585
Alignment:
Q  497 atagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||||||||||||||  ||||| |  ||||| |||||||||||||||| || |||||||||    
T  9967646 atagaagaaattatactcgcaggggctttgaaaaaggaaagaaagtaaatcgaaagagagga 9967585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 402
Target Start/End: Complemental strand, 32482540 - 32482455
Alignment:
Q  317 ccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcaccccca 402  Q
    ||||||||| |||||||| || |||| |||||| ||||| |||||| ||| ||  ||||||||||| |  ||||||| ||||||||    
T  32482540 ccacaaaccctctatatctactaacatcctccaacaccacttccctaatagagccaaattaaattctctcaacctcctcaccccca 32482455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 523 - 555
Target Start/End: Original strand, 3942875 - 3942907
Alignment:
Q  523 cttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    |||||| ||||||||||||||||||||||||||    
T  3942875 cttgaaaaaggaaagaaagtaaaccggaagaga 3942907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 362
Target Start/End: Original strand, 31396393 - 31396465
Alignment:
Q  290 cccgtaccgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccct 362  Q
    ||||||||| || || ||||| || ||||||| ||||||  |||||||||||| |||||| ||||| ||||||    
T  31396393 cccgtaccgagctttcaagactcggtaccacagaccatccttatcaaccaacatcctccaacaccacttccct 31396465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 153; Significance: 8e-81; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 137 - 575
Target Start/End: Complemental strand, 12214613 - 12214155
Alignment:
Q  137 tttatcggtccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatcaaaccaattacctactcctgatccgatcccttccctca 236  Q
    |||||| |||||||||||||| |||||||||||||||||| |  |||||||| |||| |||||||||| ||||||||||| || || |  || |||||||    
T  12214613 tttatcagtccaaaagaaagtactactaccatttcctacctc--cctcctaacattaacatcaaaccagttacctactcccgagcctactccatccctca 12214516  T
Q  237 ccttacacatcattctccaccaaccagacacctctctccctccttcctgaattc--------------ccgtaccgtgcctttaagacacgataccacaa 322  Q
    |||  |||| ||| ||||||||||| ||| ||||||||||||||||||||||||              | ||||||||||||||||||||||||||||||    
T  12214515 cctagcacaacatactccaccaaccggacgcctctctccctccttcctgaattctaccaccagcctccctgtaccgtgcctttaagacacgataccacaa 12214416  T
Q  323 accatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaggt 422  Q
     || ||| | |||| |||||||||||| |||||||| ||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12214415 gccttctttgtcaatcaacaacctccaacaccattttcctaacaaagataaattaaattcacctaacctctgcacccccaaaccacctcgattcacaggt 12214316  T
Q  423 aaacaaatagaatcccattttatccaagcaannnnnnnagagacctcacaaccccc--------nnnnnnnnnnnngattcgatagaagaaattatacct 514  Q
    ||||||||||||||  |||| ||||||| ||       ||||||||||||||||||                    ||||| ||||||||||||||||||    
T  12214315 aaacaaatagaatcagatttaatccaagaaatttttttagagacctcacaaccccccaaattttttttttaaaatagattcaatagaagaaattatacct 12214216  T
Q  515 gcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||||| |||||| |||||||||||||||||||||||| |||| |  ||| |||||||||    
T  12214215 gcaggtgccttgaaaaaggaaagaaagtaaaccggaagaaaggacaggacaaatttcagaa 12214155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 491 - 558
Target Start/End: Complemental strand, 42830085 - 42830018
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||||||||||||||||||||||||||| |   |||| |||||||||||||||||||||||||||||    
T  42830085 gattcgatagaagaaattatacctgcaggggctctgaaaaaggaaagaaagtaaaccggaagagagga 42830018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 448
Target Start/End: Complemental strand, 30044174 - 30044020
Alignment:
Q  294 taccgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctcc 393  Q
    ||||| |||||||| || |  |||||||||||||   |||| |||||||||||||| |||||||| ||| |||| || | |||||| || |||||| ||     
T  30044174 taccgagcctttaaaactctgtaccacaaaccattcttatccaccaacaacctccaacaccatttacctaataacgacagattaaaatcccctaacttct 30044075  T
Q  394 gcacccccaaaccacctcgattcacaggtaaacaaatagaatcccattttatcca 448  Q
    | ||||| |||||||| ||| ||| ||||||||||| ||||||||| || |||||    
T  30044074 gaacccctaaaccaccacgactcaaaggtaaacaaacagaatcccaattaatcca 30044020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 378
Target Start/End: Original strand, 19668632 - 19668713
Alignment:
Q  297 cgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaa 378  Q
    |||| ||||||||||||||| ||||| || ||  ||||||||| ||||||||||||||| |||||| ||||||||| |||||    
T  19668632 cgtgtctttaagacacgatatcacaacccttccttatcaaccatcaacctccagcaccacttccctaataaagatagattaa 19668713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 497 - 573
Target Start/End: Original strand, 36731766 - 36731842
Alignment:
Q  497 atagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcag 573  Q
    |||||||||||||||| |||||  || ||||| |||||||||||||||| ||| |||||||||| |||| |||||||    
T  36731766 atagaagaaattatacatgcagaggttttgaaaaaggaaagaaagtaaatcggcagagaggatagaacacatttcag 36731842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 491 - 555
Target Start/End: Complemental strand, 53504575 - 53504511
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    ||||| ||||||||||||||||||| ||| |  ||||| ||||||||||||||||||||||||||    
T  53504575 gattcaatagaagaaattatacctgtaggagctttgaaaaaggaaagaaagtaaaccggaagaga 53504511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 492 - 558
Target Start/End: Original strand, 19566194 - 19566260
Alignment:
Q  492 attcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    |||||||||||||||||||| |||| || | |||||||||||||| |||||||| ||| ||||||||    
T  19566194 attcgatagaagaaattatatctgcgggagccttgaagaaggaaataaagtaaatcgggagagagga 19566260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 491 - 545
Target Start/End: Complemental strand, 30827926 - 30827872
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaa 545  Q
    |||||||||||||||||||||||||| || | | |||||||||||||||||||||    
T  30827926 gattcgatagaagaaattatacctgcgggggccctgaagaaggaaagaaagtaaa 30827872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 555
Target Start/End: Complemental strand, 14091555 - 14091491
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    ||||| || |||||||||||||||| | | | ||||||||||||||||||||||||||| |||||    
T  14091555 gattcaatggaagaaattatacctgtaagggccttgaagaaggaaagaaagtaaaccggtagaga 14091491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 575
Target Start/End: Complemental strand, 15205082 - 15204998
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||| ||||||||||| ||||||||||| |  ||||| |||||||||||||||| | |||||||||| |  ||||| |||||||    
T  15205082 gattcaatagaagaaatcatacctgcaggggctttgaaaaaggaaagaaagtaaatcagaagagaggacatgacagacttcagaa 15204998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 575
Target Start/End: Complemental strand, 15244104 - 15244020
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||| |||||||||||||||||| |||| |  ||||| ||||||||||||||||  ||||||||||| |  ||||| |||||||    
T  15244104 gattcaatagaagaaattatacctacaggggcattgaaaaaggaaagaaagtaaattggaagagaggacatgacagacttcagaa 15244020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 503 - 567
Target Start/End: Complemental strand, 21735116 - 21735052
Alignment:
Q  503 gaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacaga 567  Q
    ||||||||||||||||| |  ||||| |||||||||||||||||||||||| |||| | ||||||    
T  21735116 gaaattatacctgcaggggctttgaaaaaggaaagaaagtaaaccggaagacaggacaaaacaga 21735052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 551
Target Start/End: Original strand, 32517875 - 32517935
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaa 551  Q
    ||||| |||||||||||||||| |||||| |  ||||| ||||||||||||||||||||||    
T  32517875 gattcaatagaagaaattatacttgcaggggctttgaaaaaggaaagaaagtaaaccggaa 32517935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 491 - 573
Target Start/End: Original strand, 20115699 - 20115781
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtc-ttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcag 573  Q
    ||||||||||||||||||||||||||||| |||  | ||||||||||||||||||||| |||| || || |  |||||||||||    
T  20115699 gattcgatagaagaaattatacctgcagg-gtcaataaagaaggaaagaaagtaaaccagaagcgaagagatgacagatttcag 20115781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 26516577 - 26516486
Alignment:
Q  301 cctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctc 392  Q
    |||||||||| |||||||| || || ||  |||||| ||||| |||||| |||||||||||  | |||||||||||||||||  ||||||||    
T  26516577 cctttaagacccgataccataacccgtccctatcaatcaacatcctccaacaccatttcccaaacaaagataaattaaattcttctaacctc 26516486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 403
Target Start/End: Complemental strand, 1231775 - 1231669
Alignment:
Q  297 cgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgca 396  Q
    ||||||||||| ||||| |||||||| || ||| | || ||||||| |||||| |||||||||||  | ||||| |||||||| || | ||||||||  |    
T  1231775 cgtgcctttaaaacacggtaccacaacccctctttttccaccaacatcctccaacaccatttccccaacaaagaaaaattaaactctcttaacctcctaa 1231676  T
Q  397 cccccaa 403  Q
    |||||||    
T  1231675 cccccaa 1231669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 491 - 548
Target Start/End: Complemental strand, 462734 - 462677
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccg 548  Q
    |||| ||| ||||||||||||||||| |  | ||||||||||||||||||||||||||    
T  462734 gatttgatggaagaaattatacctgcggcggccttgaagaaggaaagaaagtaaaccg 462677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 492 - 573
Target Start/End: Complemental strand, 26198502 - 26198421
Alignment:
Q  492 attcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcag 573  Q
    |||| |||||||||||||| ||| | || |  |||||||||||||||||||||||| ||| |||||| | |||| |||||||    
T  26198502 attcaatagaagaaattatgcctacgggagctttgaagaaggaaagaaagtaaaccagaatagaggacagaacaaatttcag 26198421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 644902 - 644969
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||||||||||||||| | ||||||||| |   |||| |||||||||||||||||| |||| |||||    
T  644902 gattcgatagaagaaatgacacctgcaggggctctgaaaaaggaaagaaagtaaaccagaagcgagga 644969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 558
Target Start/End: Complemental strand, 15028827 - 15028760
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||| ||||| ||||| |||| ||| || |  |||||||||||||||||||| ||||||||||||||    
T  15028827 gattcaatagaggaaatgatacatgcgggagctttgaagaaggaaagaaagtagaccggaagagagga 15028760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 17914459 - 17914526
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||| ||||| ||||| |||||||| || |  ||||||||||||||||| || ||||||||||||||    
T  17914459 gattcaatagaggaaatgatacctgcgggagctttgaagaaggaaagaaaatagaccggaagagagga 17914526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 558
Target Start/End: Complemental strand, 21080691 - 21080624
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    |||||| |||||||||| |||| |||||| | |||||||||||||||||| || ||||| | ||||||    
T  21080691 gattcggtagaagaaatcatacatgcaggagccttgaagaaggaaagaaaatagaccggtaaagagga 21080624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 558
Target Start/End: Complemental strand, 21085280 - 21085213
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    |||||| |||||||||| |||| |||||| | |||||||||||||||||| || ||||| | ||||||    
T  21085280 gattcggtagaagaaataatacatgcaggagccttgaagaaggaaagaaaatagaccggtaaagagga 21085213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 570
Target Start/End: Complemental strand, 39051100 - 39051021
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagattt 570  Q
    ||||| |||||||||||||||| ||  || |  ||||| |||||||||||||||||| |||| ||||||| |||| ||||    
T  39051100 gattcaatagaagaaattatacttgtgggagctttgaaaaaggaaagaaagtaaaccagaagggaggatagaacatattt 39051021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 552
Target Start/End: Complemental strand, 1231559 - 1231509
Alignment:
Q  502 agaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaag 552  Q
    ||||||||||||||| || | |||||| | |||||||||||||||||||||    
T  1231559 agaaattatacctgctggagccttgaaaagggaaagaaagtaaaccggaag 1231509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 491 - 557
Target Start/End: Original strand, 18378879 - 18378945
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagg 557  Q
    ||||| |||||| |||||||| ||||| | |  ||||| ||||||||||||||||||| ||||||||    
T  18378879 gattcaatagaataaattatatctgcatgggatttgaaaaaggaaagaaagtaaaccgaaagagagg 18378945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 491 - 557
Target Start/End: Complemental strand, 41225420 - 41225354
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagg 557  Q
    ||||| |||||||| |||||||||||||  |  ||||| || |||||||||||||||||||| ||||    
T  41225420 gattcaatagaagagattatacctgcagaggctttgaaaaaagaaagaaagtaaaccggaagggagg 41225354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 25049840 - 25049791
Alignment:
Q  506 attatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    ||||||||||  || | ||||||||||||||||||||||||||| |||||    
T  25049840 attatacctgtgggcgccttgaagaaggaaagaaagtaaaccgggagaga 25049791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 300 - 575
Target Start/End: Original strand, 17188444 - 17188728
Alignment:
Q  300 gcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcaccc 399  Q
    |||||||| |||||||||||||| || ||  ||||||||||||||||||| ||||| |||||| ||||||||||||||||||| |||| |||||| ||||    
T  17188444 gcctttaaaacacgataccacaacccttccttatcaaccaacaacctccaacaccacttccctaataaagataaattaaattcccctagcctccgaaccc 17188543  T
Q  400 ccaaaccacctcgattcacaggtaaacaaatagaatcccattttatccaagcaannnnnnnagagacctcacaaccccc---------nnnnnnnnnnnn 490  Q
    |||||||||| |||| |||||||||||| ||||||||||| |||||||||||||       ||||||||||||||||||                         
T  17188544 ccaaaccaccacgatccacaggtaaacagatagaatcccaatttatccaagcaatttttttagagacctcacaaccccccaaaaaaaaaatttaaataaa 17188643  T
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||||||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||||||| |||| | |||||| |||||||    
T  17188644 gattcgatagaggaaattatacctgtaggtgccttgaagaaagaaagaaagtaaaccggaagaaaggacagaacagacttcagaa 17188728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 290 - 478
Target Start/End: Complemental strand, 39867269 - 39867081
Alignment:
Q  290 cccgtaccgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaac 389  Q
    ||||||||  |||||||| |||||||||||||| || ||| ||||||||||||||||||| ||||| |||||| ||||||||||||||||||| ||||||    
T  39867269 cccgtacctagcctttaaaacacgataccacaacccgtctttatcaaccaacaacctccaacaccacttccctaataaagataaattaaattcccctaac 39867170  T
Q  390 ctccgcacccccaaaccacctcgattcacaggtaaacaaatagaatcccattttatccaagcaannnnnnnagagacctcacaaccccc 478  Q
    ||||| |||| ||| ||||| |||| |||||||||||||||| |||  || |||||||||||||       ||||||||||||||||||    
T  39867169 ctccgaaccctcaatccaccccgatccacaggtaaacaaataaaatttcaatttatccaagcaatttttttagagacctcacaaccccc 39867081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 308 - 453
Target Start/End: Complemental strand, 28067132 - 28066987
Alignment:
Q  308 gacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaacca 407  Q
    ||||||||||||||| || ||  |||||||||||| |||||| ||||| |||||  | |  || ||||||||||| ||||||||||| |||||||| |||    
T  28067132 gacacgataccacaacccttccttatcaaccaacatcctccaacaccacttccccaacagcgacaaattaaattcccctaacctccgaacccccaatcca 28067033  T
Q  408 cctcgattcacaggtaaacaaatagaatcccattttatccaagcaa 453  Q
    || ||||| | ||||||||| | ||| |||||||| ||||||||||    
T  28067032 ccacgatttaaaggtaaacacacagagtcccatttaatccaagcaa 28066987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 337 - 441
Target Start/End: Original strand, 137037 - 137141
Alignment:
Q  337 ccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaggtaaacaaatagaatc 436  Q
    |||||||||||||||||||||| |||  |||||| | ||||||||| | ||||||||  ||||||||||||||  |||  |||||||||||||||||||     
T  137037 ccaacaacctccagcaccattttcctagtaaagaaatattaaattcccttaacctcctaacccccaaaccaccatgatcaacaggtaaacaaatagaatt 137136  T
Q  437 ccatt 441  Q
    |||||    
T  137137 ccatt 137141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 497 - 573
Target Start/End: Complemental strand, 5320319 - 5320243
Alignment:
Q  497 atagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcag 573  Q
    |||||||||||||||| ||| || | ||||||||||||||||||||||| ||||||||||||||  |||||||||||    
T  5320319 atagaagaaattatacatgcgggagccttgaagaaggaaagaaagtaaatcggaagagaggatatgacagatttcag 5320243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 290 - 379
Target Start/End: Original strand, 12726886 - 12726975
Alignment:
Q  290 cccgtaccgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaa 379  Q
    |||||| || |||||||| ||||| ||||| ||||| ||| |||| ||||||| ||||||||||||||| ||| ||||||||||||||||    
T  12726886 cccgtagcgagcctttaaaacacggtaccaaaaaccctctctatctaccaacatcctccagcaccatttacctaataaagataaattaaa 12726975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 575
Target Start/End: Original strand, 12727097 - 12727181
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||| |||||||||||| |||||||||| |  ||||| ||||||||||||||||||||||||||||| |  || ||||||||||    
T  12727097 gattcaatagaagaaattgtacctgcaggggctttgaaaaaggaaagaaagtaaaccggaagagaggacaagactgatttcagaa 12727181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 555
Target Start/End: Complemental strand, 22196366 - 22196302
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    ||||| ||| |||||||||||||||  |||| |||||||||||||||||||||||||||||||||    
T  22196366 gattcaataaaagaaattatacctgtgggtgccttgaagaaggaaagaaagtaaaccggaagaga 22196302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 312 - 446
Target Start/End: Complemental strand, 26892267 - 26892133
Alignment:
Q  312 cgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctc 411  Q
    ||||||||||| ||||   |||| |||||||||||||| ||||| || ||| | | ||| |||||||| || |||||| |||| ||||| |||||||||     
T  26892267 cgataccacaatccattcttatccaccaacaacctccaacaccacttacctaaaagagacaaattaaaatcccctaacttccgtacccctaaaccacctg 26892168  T
Q  412 gattcacaggtaaacaaatagaatcccattttatc 446  Q
    || ||| ||||||||||| ||| ||||| ||||||    
T  26892167 gactcataggtaaacaaacagagtcccactttatc 26892133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 544
Target Start/End: Complemental strand, 39867059 - 39867006
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaa 544  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||    
T  39867059 gattcgatagaggaaattatacctgtaggtgccttgaagaaggaaagaaagtaa 39867006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 53481520 - 53481587
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||| ||||||||||||| ||||||||| |  ||||| |||||||||||||||||| ||||||||||    
T  53481520 gattcaatagaagaaattagacctgcaggggctttgaaaaaggaaagaaagtaaaccagaagagagga 53481587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 492 - 558
Target Start/End: Complemental strand, 10040157 - 10040091
Alignment:
Q  492 attcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    |||| |||||||||||||||| ||||||   ||||||||||||||||||||||||||| || |||||    
T  10040157 attccatagaagaaattatacttgcagggaccttgaagaaggaaagaaagtaaaccgggagcgagga 10040091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 555
Target Start/End: Original strand, 17535969 - 17536033
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    ||||| |||||| ||||||||||| | || | |||||| ||||||||||||||||||||||||||    
T  17535969 gattcaatagaaaaaattatacctacgggagccttgaaaaaggaaagaaagtaaaccggaagaga 17536033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 555
Target Start/End: Original strand, 37872006 - 37872070
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    ||||| ||||||||||| |||||||| || |  |||||||||||||||||||| |||||||||||    
T  37872006 gattcaatagaagaaatgatacctgcgggagctttgaagaaggaaagaaagtagaccggaagaga 37872070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 575
Target Start/End: Complemental strand, 39983556 - 39983472
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||| |||||  |||||||||||||||| |  ||||| ||||||||||||||||||| ||||||||| |  ||||| |||||||    
T  39983556 gattcaatagagaaaattatacctgcaggggctttgaaaaaggaaagaaagtaaaccgaaagagaggacaagacagacttcagaa 39983472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 555
Target Start/End: Complemental strand, 51072064 - 51072000
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    ||||| || ||||||||||||||||  || | ||||||||||||||||||||||||||| |||||    
T  51072064 gattctatggaagaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggtagaga 51072000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 497 - 560
Target Start/End: Original strand, 19498961 - 19499024
Alignment:
Q  497 atagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggata 560  Q
    |||||||||||||||| |||||| |  ||||| ||||||| |||||||||||| ||||||||||    
T  19498961 atagaagaaattatacatgcaggggctttgaaaaaggaaataaagtaaaccggcagagaggata 19499024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 545
Target Start/End: Original strand, 32227855 - 32227909
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaa 545  Q
    ||||| ||||||||||||||||||||||| |  ||||| ||||||||||||||||    
T  32227855 gattcaatagaagaaattatacctgcaggggctttgaaaaaggaaagaaagtaaa 32227909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 551
Target Start/End: Original strand, 46610677 - 46610730
Alignment:
Q  498 tagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaa 551  Q
    |||||||||||||||||| ||| |  ||||| ||||||||||||||||||||||    
T  46610677 tagaagaaattatacctgtaggggctttgaaaaaggaaagaaagtaaaccggaa 46610730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 453
Target Start/End: Original strand, 14547425 - 14547581
Alignment:
Q  297 cgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgca 396  Q
    ||||||||||| ||||||||||| |  || ||  |||||| ||| |||||||| |||||||| |||   |||||||||||||||||  ||| |||||  |    
T  14547425 cgtgcctttaacacacgataccatagcccctccttatcaatcaagaacctccaccaccatttacctagcaaagataaattaaattcctctatcctcctaa 14547524  T
Q  397 cccccaaaccacctcgattcacaggtaaacaaatagaatcccattttatccaagcaa 453  Q
     ||||| ||  || |  | ||  ||| ||||||||||||||||||||||||| ||||    
T  14547525 accccagacttccactctccaatggtgaacaaatagaatcccattttatccatgcaa 14547581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 555
Target Start/End: Original strand, 18871023 - 18871087
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    ||||| ||||| |||||||||| ||  || | ||||||||||||||||||||||| |||||||||    
T  18871023 gattcaatagaggaaattatacttgtgggagccttgaagaaggaaagaaagtaaatcggaagaga 18871087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 555
Target Start/End: Complemental strand, 28066927 - 28066875
Alignment:
Q  503 gaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    ||||||||||||| ||| | |||||| || |||||||||||||||||||||||    
T  28066927 gaaattatacctgtaggagccttgaaaaaagaaagaaagtaaaccggaagaga 28066875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 441
Target Start/End: Original strand, 46191952 - 46192060
Alignment:
Q  333 tcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaggtaaacaaatag 432  Q
    ||||||||||||| ||| |||||||| |||  |||||  | ||||||||    |||||||   |||||||| |||||  ||| |||||||||||||||||    
T  46191952 tcaaccaacaaccgccaacaccatttacctattaaagtaacattaaatttctgtaacctcttaacccccaatccaccatgatccacaggtaaacaaatag 46192051  T
Q  433 aatcccatt 441  Q
    |||||||||    
T  46192052 aatcccatt 46192060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 14547255 - 14547379
Alignment:
Q  138 ttatcggtccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatcaaaccaattacctactcctgatccgatcccttccctcac 237  Q
    ||||| ||||||||| ||||| | |||||||| || |||||  || ||||||||||||||||||| || | || | ||||||||| | ||||||||  |     
T  14547255 ttatcagtccaaaagcaagtgtttctaccattccccaccac--ccgcctaatattatcatcaaacaaactccccattcctgatcccaccccttcccgaat 14547352  T
Q  238 cttacacatcattctccaccaaccaga 264  Q
     ||||||||||| | |||||| |||||    
T  14547353 gttacacatcatccgccaccacccaga 14547379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 258
Target Start/End: Original strand, 17188276 - 17188388
Alignment:
Q  144 gtccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatcaaaccaattacctactcctgatccgatcccttccctcaccttaca 243  Q
    ||||||||||||||| ||| |||||| |||||  || || ||||  |||||||||||||||  | ||||||||   |||  ||||||||||||| | |||    
T  17188276 gtccaaaagaaagtgttacgaccattacctac--catccgcctagaattatcatcaaaccagctccctactcccattcccctcccttccctcacatgaca 17188373  T
Q  244 catcattctccacca 258  Q
    |||||| ||||||||    
T  17188374 catcatcctccacca 17188388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 410
Target Start/End: Complemental strand, 21140808 - 21140749
Alignment:
Q  351 caccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacct 410  Q
    ||||| |||||| | || |||||||||||||| ||||||||||| ||||| |||||||||    
T  21140808 caccacttccctaacaacgataaattaaattcccctaacctccgaacccctaaaccacct 21140749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 491 - 558
Target Start/End: Complemental strand, 48639471 - 48639404
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||| ||||| ||||| |||| ||| || |  |||||||||||||||||||| ||||||||||||||    
T  48639471 gattcaatagaggaaatgatacatgcgggagctttgaagaaggaaagaaagtagaccggaagagagga 48639404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 28067313 - 28067250
Alignment:
Q  139 tatcggtccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatcaaacca 204  Q
    |||| ||||||||||||||  | |||||||| ||||||||  || |||||||||||||||||||||    
T  28067313 tatctgtccaaaagaaagtattcctaccattacctaccac--ccgcctaatattatcatcaaacca 28067250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 546
Target Start/End: Complemental strand, 53100308 - 53100262
Alignment:
Q  500 gaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaac 546  Q
    ||||||||||||||||| || | ||||||||| ||||||||||||||    
T  53100308 gaagaaattatacctgcgggggccttgaagaatgaaagaaagtaaac 53100262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 546
Target Start/End: Complemental strand, 10358440 - 10358395
Alignment:
Q  501 aagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaac 546  Q
    |||||||||||||||  || | ||||||||||||||||||||||||    
T  10358440 aagaaattatacctgtgggggccttgaagaaggaaagaaagtaaac 10358395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 393
Target Start/End: Complemental strand, 16698958 - 16698898
Alignment:
Q  333 tcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctcc 393  Q
    ||||||||| ||||||||||| |||| |||  ||| |||||||||||||| | ||||||||    
T  16698958 tcaaccaacgacctccagcacgatttacctagtaatgataaattaaattcccttaacctcc 16698898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 144 - 258
Target Start/End: Complemental strand, 39867425 - 39867315
Alignment:
Q  144 gtccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatcaaaccaattacctactcctgatccgatcccttccctcaccttaca 243  Q
    |||||||| |||||| ||| |||||| ||||||||  || ||||  |||||||||||||||  | |||||||||| |||   ||||||||| || | |||    
T  39867425 gtccaaaaaaaagtgttacgaccattacctaccac--ccgcctagaattatcatcaaaccagctccctactcctgttcc--ccccttccctgacatgaca 39867330  T
Q  244 catcattctccacca 258  Q
    |||||| ||||||||    
T  39867329 catcatcctccacca 39867315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 403
Target Start/End: Complemental strand, 46218361 - 46218289
Alignment:
Q  331 tatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaa 403  Q
    ||||||||||||||||||| ||||| || ||  | ||||||||||||||  |||||| |||||  ||||||||    
T  46218361 tatcaaccaacaacctccaacaccacttacccaacaaagataaattaaaggcacctaccctcctaacccccaa 46218289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 137 - 388
Target Start/End: Original strand, 43172 - 43435
Alignment:
Q  137 tttatcggtccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatcaaaccaattacctactcctgatccgatcccttccctca 236  Q
    |||||| |||||||||||||| |||||||||||| ||||| |  |||||||| |||| |||||||||| ||||||||||| || || |  || |||||||    
T  43172 tttatcagtccaaaagaaagtactactaccattttctacctc--cctcctaacattaacatcaaaccagttacctactcccgagcctactccatccctca 43269  T
Q  237 ccttacacatcattctccaccaaccagacacctctctccctccttcctgaatt--------------cccgtaccgtgcctttaagacacgataccacaa 322  Q
    |||| |||| ||| ||||||||||| ||| |||||||||||||||||||||||              ||||||| ||||||||||||||||||| |||||    
T  43270 ccttgcacaacatactccaccaaccggacgcctctctccctccttcctgaattctaccaccaacctccccgtactgtgcctttaagacacgatagcacaa 43369  T
Q  323 accatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaa 388  Q
     || ||| | | || |||||||||||| |||||||||||| | |||||||||||||||||||||||    
T  43370 gccttctttgttaatcaacaacctccaacaccatttccctaacaaagataaattaaattcacctaa 43435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 137 - 388
Target Start/End: Original strand, 47092 - 47355
Alignment:
Q  137 tttatcggtccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatcaaaccaattacctactcctgatccgatcccttccctca 236  Q
    |||||| |||||||||||||| |||||||||||| ||||| |  |||||||| |||| |||||||||| ||||||||||| || || |  || |||||||    
T  47092 tttatcagtccaaaagaaagtactactaccattttctacctc--cctcctaacattaacatcaaaccagttacctactcccgagcctactccatccctca 47189  T
Q  237 ccttacacatcattctccaccaaccagacacctctctccctccttcctgaatt--------------cccgtaccgtgcctttaagacacgataccacaa 322  Q
    |||| |||| ||| ||||||||||| ||| |||||||||||||||||||||||              ||||||| ||||||||||||||||||| |||||    
T  47190 ccttgcacaacatactccaccaaccggacgcctctctccctccttcctgaattctaccaccaacctccccgtactgtgcctttaagacacgatagcacaa 47289  T
Q  323 accatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaa 388  Q
     || ||| | | || |||||||||||| |||||||||||| | |||||||||||||||||||||||    
T  47290 gccttctttgttaatcaacaacctccaacaccatttccctaacaaagataaattaaattcacctaa 47355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 300 - 449
Target Start/End: Original strand, 32757 - 32906
Alignment:
Q  300 gcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcaccc 399  Q
    |||||||| |||||||| ||||| || ||  ||||||||||||||||||| ||||| |||||| |||||| |||||||||||| |||| |||||| ||||    
T  32757 gcctttaaaacacgatatcacaacccttccttatcaaccaacaacctccaacaccacttccctaataaagctaaattaaattcccctagcctccgaaccc 32856  T
Q  400 ccaaaccacctcgattcacaggtaaacaaatagaatcccattttatccaa 449  Q
    |||| ||||| |||| |||||||||||| |||||||||||||||||||||    
T  32857 ccaagccaccacgatccacaggtaaacagatagaatcccattttatccaa 32906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 491 - 575
Target Start/End: Original strand, 32958 - 33042
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    |||| |||||| |||||||||| || ||||| ||||||||||||||||||||||| | |||||||||| | |||| | |||||||    
T  32958 gatttgatagaggaaattatacatgtaggtgccttgaagaaggaaagaaagtaaatcagaagagaggacagaacaaacttcagaa 33042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 339 - 449
Target Start/End: Complemental strand, 16631291 - 16631181
Alignment:
Q  339 aacaacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaggtaaacaaatagaatccc 438  Q
    ||||||||||| |||||||| ||  | |||| || ||||||||  || |||||||| ||||||| |||||| | ||||||||||||||||||||||||||    
T  16631291 aacaacctccaacaccatttgcccaacaaagctagattaaatttccccaacctccgaacccccagaccaccacaattcacaggtaaacaaatagaatccc 16631192  T
Q  439 attttatccaa 449  Q
    |||||||||||    
T  16631191 attttatccaa 16631181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 342 - 478
Target Start/End: Complemental strand, 34504113 - 34503978
Alignment:
Q  342 aacctccagcaccatttccctcataaagataaattaaattcacctaacctccgcacccccaaaccacctcgattcacaggtaaacaaatagaatcccatt 441  Q
    |||||||| ||||||||  || | |||||||||||||||   || |||||||| |||||||||||||| | ||| ||||||||||| |||||||||||||    
T  34504113 aacctccaacaccatttttctaacaaagataaattaaatatccc-aacctccgaacccccaaaccaccacaatttacaggtaaacagatagaatcccatt 34504015  T
Q  442 ttatccaagcaannnnnnnagagacctcacaaccccc 478  Q
    | ||||||||||       ||||||||||||||||||    
T  34504014 taatccaagcaattcttttagagacctcacaaccccc 34503978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 492 - 555
Target Start/End: Original strand, 36983980 - 36984043
Alignment:
Q  492 attcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    |||| |||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  36983980 attcaatagaagaaattatacatgcaggtgccttgaagaagaaaagaaagtaaaccggaagaga 36984043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 491 - 552
Target Start/End: Complemental strand, 50817306 - 50817245
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaag 552  Q
    |||||||| ||||||||||||||||| || | ||||||||||||||||||||||||||||||    
T  50817306 gattcgatggaagaaattatacctgcgggggccttgaagaaggaaagaaagtaaaccggaag 50817245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 32303969 - 32304036
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||| ||||||||||||||||||||| | |  ||||| |||||||||||||||||||||||||||||    
T  32303969 gattcaatagaagaaattatacctgcatgggctttgaaaaaggaaagaaagtaaaccggaagagagga 32304036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 33569653 - 33569720
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||| |||||||||||||||| |||||| |  ||||| |||||||||||||||||||||||||||||    
T  33569653 gattcaatagaagaaattatacttgcaggggctttgaaaaaggaaagaaagtaaaccggaagagagga 33569720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 491 - 558
Target Start/End: Complemental strand, 48241237 - 48241170
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||| ||||||||||| ||||||||||| |  ||||| |||||||||||||||||||||||||||||    
T  48241237 gattcaatagaagaaataatacctgcaggggctttgaaaaaggaaagaaagtaaaccggaagagagga 48241170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 15174633 - 15174575
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccgg 549  Q
    |||||||||||||||||||||||||  || | |||||||||||||||||||||||||||    
T  15174633 gattcgatagaagaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccgg 15174575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 362
Target Start/End: Original strand, 11649758 - 11649817
Alignment:
Q  303 tttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccct 362  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||| ||||| ||||||    
T  11649758 tttaagacacgataccacaaaccatccttatcaaccaacatcctccaacaccacttccct 11649817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 497 - 560
Target Start/End: Original strand, 11649904 - 11649967
Alignment:
Q  497 atagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggata 560  Q
    ||||||||||||||||||||||| |  ||||| || ||||||||||||||||| ||||||||||    
T  11649904 atagaagaaattatacctgcaggggctttgaaaaatgaaagaaagtaaaccggtagagaggata 11649967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 491 - 558
Target Start/End: Complemental strand, 34548108 - 34548041
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||| ||||||||||| |||||||| || |  |||||||||||||||||||| ||||||||||||||    
T  34548108 gattcaatagaagaaatgatacctgcgggagctttgaagaaggaaagaaagtagaccggaagagagga 34548041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 574
Target Start/End: Complemental strand, 14206239 - 14206162
Alignment:
Q  497 atagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcaga 574  Q
    ||||||||||| |||| |||||| |  ||||| ||||||||||||||||||||||| ||||| |  ||||||||||||    
T  14206239 atagaagaaataatacatgcaggggctttgaaaaaggaaagaaagtaaaccggaagggaggacaagacagatttcaga 14206162  T

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Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 406
Target Start/End: Original strand, 32303758 - 32303874
Alignment:
Q  290 cccgtaccgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaac 389  Q
    |||||| || |||||||| ||||| ||||| ||| | | | |||  ||||||| ||||||||||||||| ||| ||||||||||||||||  | |||| |    
T  32303758 cccgtagcgggcctttaaaacacggtaccataaatcctttctatgtaccaacatcctccagcaccatttacctaataaagataaattaaaagcgcctatc 32303857  T
Q  390 ctccgcacccccaaacc 406  Q
    ||||  |||||||||||    
T  32303858 ctcctaacccccaaacc 32303874  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 551
Target Start/End: Original strand, 43914145 - 43914205
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaa 551  Q
    ||||| || ||||||||||||||||  || | |||||||||||||||||||||||||||||    
T  43914145 gattcaatggaagaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggaa 43914205  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 491 - 558
Target Start/End: Complemental strand, 16586546 - 16586479
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||| ||| ||||||||||||||||||| |  ||||| ||||||||||||||||||| || ||||||    
T  16586546 gattcaataaaagaaattatacctgcaggagctttgaaaaaggaaagaaagtaaaccgaaatagagga 16586479  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 549
Target Start/End: Complemental strand, 14976039 - 14975981
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccgg 549  Q
    ||||| |||||||| ||||||||||| || | ||||||||||||||||||| |||||||    
T  14976039 gattctatagaagagattatacctgcgggggccttgaagaaggaaagaaaggaaaccgg 14975981  T

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Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 403
Target Start/End: Complemental strand, 13112845 - 13112733
Alignment:
Q  291 ccgtaccgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacc 390  Q
    ||||| ||||| ||||| ||||| |||||||| || ||| | || ||||||| |||||| |||||||||||  | ||||| |||||||| || | |||||    
T  13112845 ccgtaacgtgcttttaaaacacggtaccacaacccctctttgtccaccaacatcctccaacaccatttccccaacaaagaaaaattaaactctcttaacc 13112746  T
Q  391 tccgcacccccaa 403  Q
    |||  ||||||||    
T  13112745 tcctaacccccaa 13112733  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 491 - 573
Target Start/End: Complemental strand, 13112634 - 13112552
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcag 573  Q
    |||||||||  ||||||||||||||| || | |||||| | ||| ||||||||||||||||| || || |  |||||||||||    
T  13112634 gattcgataagagaaattatacctgctggagccttgaaaatggagagaaagtaaaccggaagcgatgacaggacagatttcag 13112552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 258
Target Start/End: Complemental strand, 16631497 - 16631386
Alignment:
Q  145 tccaaaagaaagtgctactaccatttcctaccacaccctcctaatattatcatcaaaccaattacctactcctgatccgatcccttccctcaccttacac 244  Q
    |||||||||||||| | |||||||| |||||  ||||| |||| |||| |||||||||||||| || || || || || | ||| |||||||  | |||     
T  16631497 tccaaaagaaagtgtttctaccattacctac--cacccgcctagtattgtcatcaaaccaatttccaacacccgacccaaccccatccctcatgtgacaa 16631400  T
Q  245 atcattctccacca 258  Q
    ||||||||||||||    
T  16631399 atcattctccacca 16631386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 575
Target Start/End: Complemental strand, 41806063 - 41805994
Alignment:
Q  506 attatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcagaa 575  Q
    ||||||||||| || |  ||||| ||||||||||||||||||||||| ||||| |  ||||| |||||||    
T  41806063 attatacctgcgggggctttgaaaaaggaaagaaagtaaaccggaagggaggacaagacagacttcagaa 41805994  T

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Target: scaffold0153 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 560
Target Start/End: Complemental strand, 23673 - 23604
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggata 560  Q
    ||||||||||| || || ||||||| ||| | ||||||||||||||||||||||||||| ||||||||||    
T  23673 gattcgatagaggagatgatacctgtaggggccttgaagaaggaaagaaagtaaaccgggagagaggata 23604  T

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Target: scaffold0031 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 67248 - 67315
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtct-tgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||||||||| ||||||||||||||||| | || |||| |||||||||||||||||||||||||||||    
T  67248 gattcgatagaggaaattatacctgcagg-gactctgaaaaaggaaagaaagtaaaccggaagagagga 67315  T

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Target: scaffold0693 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0693
Description:

Target: scaffold0693; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 294 - 361
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagagga 558  Q
    ||||| ||||||||||||| ||||||||| |  ||||| |||||||||||||||||| ||||||||||    
T  294 gattcaatagaagaaattagacctgcaggggctttgaaaaaggaaagaaagtaaaccagaagagagga 361  T

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Target: scaffold0309 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 491 - 573
Target Start/End: Complemental strand, 632 - 550
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatacaacagatttcag 573  Q
    |||||||| || |||||||||||||  || | ||||||||||||||||||||||||||| ||||| || |  |||||||||||    
T  632 gattcgatggatgaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggtagagatgacaggacagatttcag 550  T

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Target: scaffold0074 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 294 - 453
Target Start/End: Original strand, 37119 - 37286
Alignment:
Q  294 taccgtgcctttaagacacgataccacaaaccatctatatcaaccaacaacctccagcaccatttccctcataaagataaattaaattcacctaacctcc 393  Q
    |||||||||||||| | ||| |||||||| || ||  ||| ||  ||||||||  ||||||| |||||| | ||||||||||||||| | ||||||||||    
T  37119 taccgtgcctttaacaaacggtaccacaacccttccttattaagaaacaacctttagcaccacttccctaacaaagataaattaaatacccctaacctcc 37218  T
Q  394 gcacc--------cccaaaccacctcgattcacaggtaaacaaatagaatcccattttatccaagcaa 453  Q
      |||        || |||||||| |||| || |||||||||||||||||| ||||| ||||||||||    
T  37219 taacctcttaaccccgaaaccaccacgatacataggtaaacaaatagaatctcatttgatccaagcaa 37286  T

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Target: scaffold0533 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 555
Target Start/End: Original strand, 734 - 798
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    ||||||||||||||||||| || ||  ||   |||||||||| ||||||||||||||||||||||    
T  734 gattcgatagaagaaattaaacttgtggggaccttgaagaagaaaagaaagtaaaccggaagaga 798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 491 - 555
Target Start/End: Original strand, 5982 - 6046
Alignment:
Q  491 gattcgatagaagaaattatacctgcaggtgtcttgaagaaggaaagaaagtaaaccggaagaga 555  Q
    |||| |||||||||||||||||||   || | |||||||||||||||||| ||| ||||||||||    
T  5982 gatttgatagaagaaattatacctatgggggccttgaagaaggaaagaaaataatccggaagaga 6046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 4090 - 4042
Alignment:
Q  314 ataccacaaaccatctatatcaaccaacaacctccagcaccatttccct 362  Q
    |||||||||||||||| |||| ||||||| || ||| ||||||||||||    
T  4090 ataccacaaaccatctctatccaccaacatccgccaacaccatttccct 4042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 134388 - 134340
Alignment:
Q  314 ataccacaaaccatctatatcaaccaacaacctccagcaccatttccct 362  Q
    |||||||||||||||| |||| ||||||| || ||| ||||||||||||    
T  134388 ataccacaaaccatctctatccaccaacatccgccaacaccatttccct 134340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 312215 - 312167
Alignment:
Q  314 ataccacaaaccatctatatcaaccaacaacctccagcaccatttccct 362  Q
    |||||||||||||||| |||| ||||||| || ||| ||||||||||||    
T  312215 ataccacaaaccatctctatccaccaacatccgccaacaccatttccct 312167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 327669 - 327621
Alignment:
Q  314 ataccacaaaccatctatatcaaccaacaacctccagcaccatttccct 362  Q
    |||||||||||||||| |||| ||||||| || ||| ||||||||||||    
T  327669 ataccacaaaccatctctatccaccaacatccgccaacaccatttccct 327621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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