View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17734_low_50 (Length: 202)

Name: NF17734_low_50
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17734_low_50
NF17734_low_50
[»] chr2 (2 HSPs)
chr2 (100-195)||(13138731-13138824)
chr2 (1-34)||(13138631-13138664)
[»] chr5 (2 HSPs)
chr5 (137-176)||(17697014-17697053)
chr5 (137-174)||(17946855-17946892)
[»] chr7 (3 HSPs)
chr7 (138-178)||(38650349-38650389)
chr7 (137-176)||(27293299-27293338)
chr7 (138-178)||(8751526-8751566)
[»] chr3 (1 HSPs)
chr3 (137-176)||(12214574-12214613)


Alignment Details
Target: chr2 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 13138731 - 13138824
Alignment:
Q  100 ttgttgattttaatgcaaacttaataattttagtttctttatcggtccaaaagaaagtgctactaccatttcctaccacaccctcctagtattatc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||| |||||||    
T  13138731 ttgttgattttaatgcaaacttaataattttagtttctttatcagtccaaaagaaagtgctactaccatttcctac--caccctcctaatattatc 13138824  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 13138631 - 13138664
Alignment:
Q  1 tattgggaaatcttaaggtattggttaagagaac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  13138631 tattgggaaatcttaaggtattggttaagagaac 13138664  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 17697014 - 17697053
Alignment:
Q  137 tttatcggtccaaaagaaagtgctactaccatttcctacc 176  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  17697014 tttatcagtccaaaagaaagtgctactaccatttcctacc 17697053  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 17946855 - 17946892
Alignment:
Q  137 tttatcggtccaaaagaaagtgctactaccatttccta 174  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  17946855 tttatcagtccaaaagaaagtactactaccatttccta 17946892  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 38650389 - 38650349
Alignment:
Q  138 ttatcggtccaaaagaaagtgctactaccatttcctaccac 178  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  38650389 ttatcagtccaaaagaaagtgctactatcatttcctaccac 38650349  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 176
Target Start/End: Complemental strand, 27293338 - 27293299
Alignment:
Q  137 tttatcggtccaaaagaaagtgctactaccatttcctacc 176  Q
    |||||| |||||||||||||| ||||||||||||||||||    
T  27293338 tttatcagtccaaaagaaagtactactaccatttcctacc 27293299  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 8751566 - 8751526
Alignment:
Q  138 ttatcggtccaaaagaaagtgctactaccatttcctaccac 178  Q
    ||||| ||||||||||||||||||| |||||| ||||||||    
T  8751566 ttatcagtccaaaagaaagtgctacgaccattacctaccac 8751526  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 176
Target Start/End: Complemental strand, 12214613 - 12214574
Alignment:
Q  137 tttatcggtccaaaagaaagtgctactaccatttcctacc 176  Q
    |||||| |||||||||||||| ||||||||||||||||||    
T  12214613 tttatcagtccaaaagaaagtactactaccatttcctacc 12214574  T

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