View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17734_low_6 (Length: 521)
Name: NF17734_low_6
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17734_low_6 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 20 - 508
Target Start/End: Original strand, 42445672 - 42446160
Alignment:
| Q |
20 |
caatggtttcagtctctcagctgatgtacatgtcctaccagcaacacatgtaagctatgctgctggactaaagatcaaggcctacataaattccacttca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445672 |
caatggtttcagtctctcagctgatgtacatgtcctaccagcaacacatgtaagctatgctgctggactaaagatcaaggcctacataaattccacttca |
42445771 |
T |
|
| Q |
120 |
ccgacagcaaccatttcgtttaagggaacgattatcgggaactccttagcgccatccgttgcatcattctcttcaagaggtcccaacttgccgagtcctg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445772 |
ccgacagcaaccatttcgtttaagggaacgattatcgggaactccttagcgccatccgttgcatcattctcttcaagaggtcccaacttgccgagtcctg |
42445871 |
T |
|
| Q |
220 |
gtatattgaaaccggatattataggaccaggcgtgaacatcctagcggcatggccattccccctggataacaacaccaattcaaaactaaatttcaacat |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445872 |
gtatattgaaaccggatattataggaccaggcgtgaacatcctggcggcatggccattccccctggataacaacaccaattcaaaactaaatttcaacat |
42445971 |
T |
|
| Q |
320 |
tatgtcaggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatctgcc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445972 |
tatgtcaggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatctgcc |
42446071 |
T |
|
| Q |
420 |
ataatgacttctgcagacacactaaatttagaaaacaaactcattgtcgatgaaacacttcagccggcaaatctttttgccacaggttc |
508 |
Q |
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| T |
42446072 |
ataatgacttctgcagacacactaaatttagaaaacaaactcattgtcgatgaaacacttcagccggcaaatctttttgccacaggttc |
42446160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 415
Target Start/End: Complemental strand, 3207962 - 3207862
Alignment:
| Q |
315 |
aacattatgtcaggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaat |
414 |
Q |
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||||| || ||||| || ||||||||||| || ||||||||||||||||| |||||| | |||| ||||||||| |||||||| ||||| || ||||||| |
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| T |
3207962 |
aacataatttcaggtacctcaatgtcatgtcctcatcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaat |
3207863 |
T |
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| Q |
415 |
c |
415 |
Q |
| |
|
| |
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|
| T |
3207862 |
c |
3207862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 327 - 415
Target Start/End: Original strand, 3179002 - 3179090
Alignment:
| Q |
327 |
ggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
415 |
Q |
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||||| |||||||| || || ||||| ||||||||||| || ||| ||||||| ||||||||||||||||| ||||| || |||||||| |
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| T |
3179002 |
ggcacttcaatgtcttgtcctcatctcagtggcattgctgcattgatcaaaagttctcatcctgattggtcgccagctgcaataaaatc |
3179090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 327 - 415
Target Start/End: Complemental strand, 3239838 - 3239750
Alignment:
| Q |
327 |
ggcacatcaatgtcatgcccacatcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
415 |
Q |
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| T |
3239838 |
ggcacttcaatgtcttgtcctcatctcagtggcattgctgcattgatcaaaagttctcatcctgattggtcgccagctgcaataaaatc |
3239750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 415
Target Start/End: Complemental strand, 3201955 - 3201888
Alignment:
| Q |
348 |
catcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
415 |
Q |
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| T |
3201955 |
catcttagtggcattgctgctttgttgaaaaactcgcatccagattggtcaccagcagctataaaatc |
3201888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 415
Target Start/End: Complemental strand, 3225764 - 3225703
Alignment:
| Q |
354 |
agtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatc |
415 |
Q |
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| T |
3225764 |
agtggtattgctgcattgatcaaaagttctcatcctgattggtcaccagccgctataaaatc |
3225703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 5725736 - 5725700
Alignment:
| Q |
310 |
atttcaacattatgtcaggcacatcaatgtcatgccc |
346 |
Q |
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| T |
5725736 |
atttcaacattatctcaggcacatccatgtcatgccc |
5725700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 68159 - 68220
Alignment:
| Q |
310 |
atttcaacattatgtcaggcacatcaatgtcatgcccacatcttagtggcattgcggctttg |
371 |
Q |
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||||||||||||| ||||||||||| ||||||||||| ||| | ||||| | ||||||||| |
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| T |
68159 |
atttcaacattatctcaggcacatccatgtcatgccctcatgtaagtggattagcggctttg |
68220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 427
Target Start/End: Original strand, 18214753 - 18214797
Alignment:
| Q |
383 |
tcatcctgattggtcaccagcagccataaaatctgccataatgac |
427 |
Q |
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| T |
18214753 |
tcatcctgattggtcacctgcagctataaaatctgctatcatgac |
18214797 |
T |
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