View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17734_low_8 (Length: 488)

Name: NF17734_low_8
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17734_low_8
NF17734_low_8
[»] chr4 (8 HSPs)
chr4 (24-330)||(26643216-26643522)
chr4 (147-369)||(26671195-26671417)
chr4 (25-312)||(26657960-26658247)
chr4 (394-472)||(26643517-26643595)
chr4 (195-297)||(26664209-26664311)
chr4 (391-451)||(26658329-26658389)
chr4 (395-472)||(26664412-26664489)
chr4 (391-450)||(26671442-26671501)
[»] chr3 (2 HSPs)
chr3 (213-313)||(54780829-54780929)
chr3 (391-450)||(54781010-54781069)


Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 24 - 330
Target Start/End: Original strand, 26643216 - 26643522
Alignment:
Q  24 ggaacataaaaaatcacaagattgctcaccatagcagggtaagtgtcaccaacaatcttttgtattaacgattgaatttcgctatcaggatttagaaagg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26643216 ggaacataaaaaatcacaagattgctcaccatagcagggtaagtgtcaccaacaatcttttgtattaacgattgaatttcgctatcaggatttagaaagg 26643315  T
Q  124 tggaaaagtcctaaaaacacaattataacataaatatttttgcatgttatagaaattcaaaggtaatgcaatgaagaacaattcatggtaacataccacg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26643316 tggaaaagtcctaaaaacacaattataacataaatatttttgcatgttatagaaattcaaaggtaatgcaatgaagaacaattcatggtaacataccacg 26643415  T
Q  224 gcttgaacatctaagattatggtgaatgaatctatgtgcctcttggaagcaattgtgcaagcaggaaactttatggcaaacaatttctcataatcctgta 323  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26643416 gcttgaacatctaagattatggtgaatgaatctatgagcctcttggaagcaattgtgcaagcaggaaactttatggcaaacaatttctcaaaatcctgta 26643515  T
Q  324 taatgta 330  Q
    |||||||    
T  26643516 taatgta 26643522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 147 - 369
Target Start/End: Original strand, 26671195 - 26671417
Alignment:
Q  147 tataacataaatatttttgcatgttatagaaattcaaaggtaatgcaatgaagaacaattcatggtaacataccacggcttgaacatctaagattatggt 246  Q
    ||||| ||||||||||||||| |||| ||||||||| |   |||||||||| |||||| | |||| ||||||||||| ||||||||||||||||| ||||    
T  26671195 tataaaataaatatttttgcaagttaaagaaattcacaaacaatgcaatgaggaacaaataatggcaacataccacgccttgaacatctaagattgtggt 26671294  T
Q  247 gaatgaatctatgtgcctcttggaagcaattgtgcaagcaggaaactttatggcaaacaatttctcataatcctgtataatgtacttcacatatctctcc 346  Q
        |||||||||||||||||||||||||||||||||||||||||||| || |||||  |||||||| | ||  ||| |  ||||||||||||||| |||    
T  26671295 actggaatctatgtgcctcttggaagcaattgtgcaagcaggaaacttaatcgcaaaagatttctcaaactcgcgtacatggtacttcacatatctatcc 26671394  T
Q  347 ctaatagtaactggcataagttt 369  Q
     || | |||||| ||||||||||    
T  26671395 atagttgtaacttgcataagttt 26671417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 25 - 312
Target Start/End: Original strand, 26657960 - 26658247
Alignment:
Q  25 gaacataaaaaatcacaagattgctcaccat---agcagggtaagtgtcaccaacaatcttttgtattaacgattgaatttcgctatcaggatttagaaa 121  Q
    ||||||||||||| ||||||||||||||||    ||||||| |  ||||| ||| ||||| |||||||  |||||  |||||||   ||   |||||| |    
T  26657960 gaacataaaaaataacaagattgctcaccaccacagcagggcagttgtcatcaagaatctcttgtattcgcgatttgatttcgc---caaactttagata 26658056  T
Q  122 ggtggaaaagtcctaaaaacacaattataaca-taaatatttttgcatgttatagaaattcaaaggtaatgcaatgaagaacaattcatggtaacatacc 220  Q
    | |  ||||||||||||||||||| |||||   ||||||||||||||||||||||||||||| ||| |||||||| | ||| |||| || | ||||||||    
T  26658057 gttaaaaaagtcctaaaaacacaactataagtgtaaatatttttgcatgttatagaaattcacaggcaatgcaattaggaa-aattaattgcaacatacc 26658155  T
Q  221 acggcttgaacatctaagattatggtgaatgaatctatgtgcctcttggaagcaattgtgcaagcaggaaactttatggcaaacaatttctc 312  Q
    | | |||||||||| | |||| |||| | ||||||||||| ||||||||||||||||||||| |||||||||||||  ||||||||| ||||    
T  26658156 atgccttgaacatcgatgattttggttattgaatctatgttcctcttggaagcaattgtgcatgcaggaaactttaccgcaaacaatatctc 26658247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 394 - 472
Target Start/End: Original strand, 26643517 - 26643595
Alignment:
Q  394 aatgaaaacaggccttccttccttatcaacgccatgatagccatgtggaaaatacttgccgatttcatttaattcattg 472  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26643517 aatgtaaacaggccttccttccttatcaacgccatgatagccatgtggaaaatacttgccgatttcatttaattcattg 26643595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 195 - 297
Target Start/End: Original strand, 26664209 - 26664311
Alignment:
Q  195 tgaagaacaattcatggtaacataccacggcttgaacatctaagattatggtgaatgaatctatgtgcctcttggaagcaattgtgcaagcaggaaactt 294  Q
    ||||||||||||||||| ||||||| | | |||||| |||||||||| || ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  26664209 tgaagaacaattcatggcaacatacaatgccttgaagatctaagattgtgatgcttgaatctatgtgcctcttggaagcaattgtgcaagcaggaaactt 26664308  T
Q  295 tat 297  Q
    |||    
T  26664309 tat 26664311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 391 - 451
Target Start/End: Original strand, 26658329 - 26658389
Alignment:
Q  391 ttcaatgaaaacaggccttccttccttatcaacgccatgatagccatgtggaaaatacttg 451  Q
    ||||||||||||||||||||||| ||||||||| ||||| || ||||||||| ||||||||    
T  26658329 ttcaatgaaaacaggccttcctttcttatcaacaccatggtatccatgtggataatacttg 26658389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 472
Target Start/End: Original strand, 26664412 - 26664489
Alignment:
Q  395 atgaaaacaggccttccttccttatcaacgccatgatagccatgtggaaaatacttgccgatttcatttaattcattg 472  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||||||  ||||||    | ||||||||||||||||    
T  26664412 atgaaaacaggtcttccctccttatcaacaccatgatagccatgtggattatacttaataacttcatttaattcattg 26664489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 450
Target Start/End: Original strand, 26671442 - 26671501
Alignment:
Q  391 ttcaatgaaaacaggccttccttccttatcaacgccatgatagccatgtggaaaatactt 450  Q
    ||||||| ||||||||||||| ||||||||||| |||||||  ||||||||| |||||||    
T  26671442 ttcaatgtaaacaggccttccctccttatcaacaccatgatgcccatgtggataatactt 26671501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 313
Target Start/End: Original strand, 54780829 - 54780929
Alignment:
Q  213 aacataccacggcttgaacatctaagattatggtgaatgaatctatgtgcctcttggaagcaattgtgcaagcaggaaactttatggcaaacaatttctc 312  Q
    ||||||||||  ||||||||||||||||| |||||  |||||||||||||||||| | |||||| |||||||||||||||||||| |||||  |||||||    
T  54780829 aacataccactccttgaacatctaagattgtggtgcttgaatctatgtgcctctttgcagcaatagtgcaagcaggaaactttattgcaaaagatttctc 54780928  T
Q  313 a 313  Q
    |    
T  54780929 a 54780929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 450
Target Start/End: Original strand, 54781010 - 54781069
Alignment:
Q  391 ttcaatgaaaacaggccttccttccttatcaacgccatgatagccatgtggaaaatactt 450  Q
    ||||||  |||||||||||||||||||||| || ||||||| |||||||||| |||||||    
T  54781010 ttcaatataaacaggccttccttccttatctacaccatgatggccatgtggataatactt 54781069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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