View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17734_low_9 (Length: 474)
Name: NF17734_low_9
Description: NF17734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17734_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 4931911 - 4932167
Alignment:
| Q |
11 |
cagtatcataggatataagaccatatagctctcatgaaccataatcactcg--tccttcaatcaaagtcgtatgaatcgtctgatttccttaagagatat |
108 |
Q |
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| T |
4931911 |
cagtatcgttggatataagaccatatagttctcatgaaccataatcacttgagtccttcaatcaaagtcgtatgaatcgtctgattcccttaagagatat |
4932010 |
T |
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| Q |
109 |
cctaaagtgggatatccctaatggattgattacggtgaatgcttacttgaccacgcatgcgatatgagatgtcctt--------aagccaccatgtctcc |
200 |
Q |
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| T |
4932011 |
cctaaagtgagatatccttaatggattgattacggtgaatgcttacttgaacccgcatgcgatatgagatgtccttaagtgaggaagccagtgtgtctcc |
4932110 |
T |
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| Q |
201 |
aaatacttggaattcagatttctttcgcaaggattctgcattcaaccaagcagggta |
257 |
Q |
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| T |
4932111 |
aaatacttggaattcagacttctcatgcaaggattctgcattcaaccaagcagggta |
4932167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 304 - 455
Target Start/End: Original strand, 4932183 - 4932334
Alignment:
| Q |
304 |
ttatgattgaaaataccaaacttgaatctggatcgttcgatcttgatggaacaaccaccaacatttcaatcgcgtgaatgctaagaatccatggctgtcg |
403 |
Q |
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| T |
4932183 |
ttatgattgaaaataccaaacttgaatctggatcgtttgatcttgatggaacaaccaccaacatttcaatcgcgtgaatgctaagaatccctggctgtcg |
4932282 |
T |
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| Q |
404 |
gggtgccgaatccaaatatttgattaggcaaacattataattgagaggcatt |
455 |
Q |
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| T |
4932283 |
gggtgccgaatccaaatatttgattaggcagacattataattgagacgcatt |
4932334 |
T |
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