View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17735_high_3 (Length: 350)
Name: NF17735_high_3
Description: NF17735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17735_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 333
Target Start/End: Original strand, 40265246 - 40265568
Alignment:
| Q |
11 |
gtagcaaaggcttgaccaaatattctgaaaccttggctgcaacggagagagcaatgtctgccatatttgaatggcaaagctattgcaacctatgtaaaag |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40265246 |
gtagtaaaggcttgaccaaatattctgaaaccttggctgcaacggagagagcaatgtctgccatatttgaatggcaaagctattgcaacctatgtaaaag |
40265345 |
T |
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| Q |
111 |
aaagtcatggtaattagttgaatagaatgcatgcatatattggttaactggtagcagtaatctatgttgcaacacaaagaggtgttgccataggaaaaca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40265346 |
aaagtcatggtaattagttgaatagaatgcatgcatatattggttaactggtagcagtaatctatgttgcaacacaaagaagtgttgccataggaaaaca |
40265445 |
T |
|
| Q |
211 |
caacttctgactaattacaacaacaacaagccttatccccctaagtggagtcaactatatgaatcaaattacactttaatgttaagaaaagttagttaga |
310 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40265446 |
cgacttctgactaattacaacaacaacaagccttatccccctaagtggagtcgactatatggatcaaattacactttaatgttaagaaaagttagttaga |
40265545 |
T |
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| Q |
311 |
gttcgtttgggggagggccgctt |
333 |
Q |
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||||||||||||||||||||||| |
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| T |
40265546 |
gttcgtttgggggagggccgctt |
40265568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 36101777 - 36101833
Alignment:
| Q |
227 |
acaacaacaac-aagccttatccccctaagtggagtcaactatatgaatcaaattac |
282 |
Q |
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| T |
36101777 |
acaacaacaaccaagccttatcccactaagtggggtcaactacatggatcaaattac |
36101833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 9210704 - 9210760
Alignment:
| Q |
227 |
acaacaacaac-aagccttatccccctaagtggagtcaactatatgaatcaaattac |
282 |
Q |
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||||||||||| |||||||||||| |||||||| |||| ||| ||| |||||||||| |
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| T |
9210704 |
acaacaacaacgaagccttatcccactaagtggggtcagctacatggatcaaattac |
9210760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 258
Target Start/End: Original strand, 51811277 - 51811311
Alignment:
| Q |
224 |
attacaacaacaacaagccttatccccctaagtgg |
258 |
Q |
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| T |
51811277 |
attacaacaacaacaagccttatcccactaagtgg |
51811311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 15665383 - 15665327
Alignment:
| Q |
227 |
acaacaacaac-aagccttatccccctaagtggagtcaactatatgaatcaaattac |
282 |
Q |
| |
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||||||||||| |||||||||||| |||||||| |||| ||| ||| |||||||||| |
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| T |
15665383 |
acaacaacaaccaagccttatcccactaagtggggtcagctacatggatcaaattac |
15665327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 29399086 - 29399030
Alignment:
| Q |
227 |
acaacaacaac-aagccttatccccctaagtggagtcaactatatgaatcaaattac |
282 |
Q |
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||||||||||| ||||||| |||| |||||||| |||| ||| |||||||||||||| |
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| T |
29399086 |
acaacaacaaccaagccttttcccactaagtggggtcagctacatgaatcaaattac |
29399030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 12734982 - 12734924
Alignment:
| Q |
227 |
acaacaacaac-aagccttatccccctaagtggagtcaactatatgaatcaaattacac |
284 |
Q |
| |
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||||||||||| |||||||||||| |||||||| ||| |||| ||| |||||||||||| |
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| T |
12734982 |
acaacaacaaccaagccttatcccactaagtggggtcgactacatggatcaaattacac |
12734924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 28960211 - 28960263
Alignment:
| Q |
227 |
acaacaacaac-aagccttatccccctaagtggagtcaactatatgaatcaaa |
278 |
Q |
| |
|
||||||||||| |||||||||||| |||| ||||||| |||| |||||||||| |
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| T |
28960211 |
acaacaacaaccaagccttatcccactaaatggagtcgactacatgaatcaaa |
28960263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 293
Target Start/End: Complemental strand, 45419518 - 45419450
Alignment:
| Q |
226 |
tacaacaacaac-aagccttatccccctaagtggagtcaactatatgaatcaaattacactttaatgtt |
293 |
Q |
| |
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|||||||||||| |||||||||||| |||||||| ||| ||| ||| |||||||||||| ||||||| |
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| T |
45419518 |
tacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacaccataatgtt |
45419450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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