View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17735_low_1 (Length: 728)
Name: NF17735_low_1
Description: NF17735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17735_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-151; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 9 - 392
Target Start/End: Complemental strand, 55848421 - 55848038
Alignment:
| Q |
9 |
agaagcaaaggaagaatagatatannnnnnnggtaacatttgcttgcaactgtgtttaaatcgactcgttgaacatacctgtagctactatataatattg |
108 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55848421 |
agaagaaaaggaagaatagatatatttttttggtaacatttgcttgcaactgtgtttaaatcgactcgttgaacatacctgtagctactatataatattg |
55848322 |
T |
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| Q |
109 |
gtgcgacaaatgagtgtaagcaaacattgcatcatctgnnnnnnnnnnnnnnnnnnnnngtggaaaagagcctaaatcactagttacctttcaaattggc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
55848321 |
gtgcgacaaatgagtgtaagcaaacattgcatcatctgttttttttttctttcttttttgtggaaaagagcctaaatcactagttacctttcaaattggc |
55848222 |
T |
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| Q |
209 |
tggnnnnnnnntgatagcgagtcatttcctatgtcctacttacataactggtacctaccttctttatgtgaaacactttgcaaccttgaattgaaatttt |
308 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55848221 |
tggaaaaaaaatgatagcgagtcatttcctatgtcctacttacataactggtacctaccttctttatgtgaaacactttgcaaccttgaattgaaatttt |
55848122 |
T |
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| Q |
309 |
gttttcttcattaaattcttcgtacagggaacctatgattgaatagttttccttaggaattcgcttgaccaaacgtaattaaac |
392 |
Q |
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| T |
55848121 |
gttttcttcattaaattcttcgtacagggaacctatgattgaatagttttccttaggaattcgcttgaccaaacgtaattaaac |
55848038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 392
Target Start/End: Complemental strand, 55784239 - 55783856
Alignment:
| Q |
9 |
agaagcaaaggaagaatagatatannnnnnnggtaacatttgcttgcaactgtgtttaaatcgactcgttgaacatacctgtagctactatataatattg |
108 |
Q |
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| T |
55784239 |
agaagaaaaggaagaatagatatatttttttggtaacatttgcttgcaactgtgtttaaatcgactcgttgaacatacctgtagctactatataatattg |
55784140 |
T |
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| Q |
109 |
gtgcgacaaatgagtgtaagcaaacattgcatcatctgnnnnnnnnnnnnnnnnnnnnngtggaaaagagcctaaatcactagttacctttcaaattggc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
55784139 |
gtgcgacaaatgagtgtaagcaaacattgcatcatctgtgttttttttctttcttttttgtggaaaagagcctaaatcactagttacctttcaaattgtc |
55784040 |
T |
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| Q |
209 |
tggnnnnnnnntgatagcgagtcatttcctatgtcctacttacataactggtacctaccttctttatgtgaaacactttgcaaccttgaattgaaatttt |
308 |
Q |
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| T |
55784039 |
tggaaaaaaaatgatagcgagtcatttcctatgtcctacttacataactggtacctaccttctttatgtgaaacactttgcaaccttgaattgaaatttt |
55783940 |
T |
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| Q |
309 |
gttttcttcattaaattcttcgtacagggaacctatgattgaatagttttccttaggaattcgcttgaccaaacgtaattaaac |
392 |
Q |
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| T |
55783939 |
gttttcttcattaaattcttcgtacagggaacctatgattgaatagttttccttaggaattcgcttgaccaaacgtaattaaac |
55783856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 447 - 710
Target Start/End: Complemental strand, 55783801 - 55783538
Alignment:
| Q |
447 |
gcagcaattaggaattaggaaccaaagtaagaaaaacttgtgcactagaatttgtgatgcaatttattcattgaaagcattatgagttcatatttatgct |
546 |
Q |
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| T |
55783801 |
gcagcaattaggaattaggaaccaaagtaagaaaaacttgtgcactagaatttgtgatgcaatttattcattgaaagcattatgagttcatatttatgct |
55783702 |
T |
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| Q |
547 |
gaaattgaagcaatgtagataggcatggtaggagagtccatacgggtatccgtccgaaccaaactcgatttgttggttttttctactttgattggattta |
646 |
Q |
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| T |
55783701 |
gaaattgaagcaatgtagataggcatggtaggagagtccatacgggtatccgtccgaaccaaactcgatttgttggttttttctactttgattggattta |
55783602 |
T |
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| Q |
647 |
ggtatggttcaagttttatccgattttaaaacaagggtatgagacggttaatgaggtaataggt |
710 |
Q |
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| T |
55783601 |
ggtatggttcaagttttatccgattttaaaacaagggtatgagacggttaatgaggtaataggt |
55783538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 447 - 710
Target Start/End: Complemental strand, 55847983 - 55847720
Alignment:
| Q |
447 |
gcagcaattaggaattaggaaccaaagtaagaaaaacttgtgcactagaatttgtgatgcaatttattcattgaaagcattatgagttcatatttatgct |
546 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55847983 |
gcagcaattaggaattaggaaccaaagtaagaaaaacttgtgcactagaatctgtgatgcaatttattcattgaaagcattatgagttcatatttatgct |
55847884 |
T |
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| Q |
547 |
gaaattgaagcaatgtagataggcatggtaggagagtccatacgggtatccgtccgaaccaaactcgatttgttggttttttctactttgattggattta |
646 |
Q |
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| T |
55847883 |
gaaattgaagcaatgtagataggcatggtaggagagtccatccgggcatccgtccgaaccaaactcgatttgttggttttttctactttgattggattta |
55847784 |
T |
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| Q |
647 |
ggtatggttcaagttttatccgattttaaaacaagggtatgagacggttaatgaggtaataggt |
710 |
Q |
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| T |
55847783 |
ggtatggttcaagttttatccgattttaaaacaagggtatgagacggttaatgaggtaataggt |
55847720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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