View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17735_low_3 (Length: 654)

Name: NF17735_low_3
Description: NF17735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17735_low_3
NF17735_low_3
[»] chr1 (1 HSPs)
chr1 (17-648)||(47514936-47515568)


Alignment Details
Target: chr1 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 17 - 648
Target Start/End: Complemental strand, 47515568 - 47514936
Alignment:
Q  17 ataactagcattattctaattcattaccccttaatcaatgagatatggaaacagaatgtaaagtacatagtaccacaataagatttataactaccttcca 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47515568 ataactagcaatattctaattcattaccccttaatcaatgagatatggaaacagaatgtaaagtacatagtaccacaataagatttgtaactaccttcca 47515469  T
Q  117 caattaagatcggacggttaatatttcaaccttgaaatttaatataaaaccaaaaaattaagaactgtcttaaaatttgaactgtcagatcggacggttc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47515468 caattaagatcggacggttaatatttcaaccttgaaatttaatataaaac-aaaaaattaagaactgtcttaaaatttgaactgtcagatcggacggttc 47515370  T
Q  217 tgaggtgctgaatgcacctcactgcacacacacctctgtatctaatctgaattccaaggatcggtgacagtgttct--ctcttgaaagacctttcctttg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  47515369 tgaggtgctgaatgcacctcactgcacacacacctctgtatctaatctgaattccaaggatcggtgacagtgttctatctcttgaaagacctttcctttg 47515270  T
Q  315 catggcacatgttatattgcaattgtttatatataagatttgtaactacctctatatgaagtcaagtgattgttaaattcagttacaatatctttcattt 414  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47515269 catggcacgtgttatattgcaattgtttatatataagatttgtaactacctctatatgaagtcaagtgattgttaaattcagttacaatatctttcattt 47515170  T
Q  415 gttacacttgcttattgaaatggacgtgactttcatgagggagagtggagaatctttcacaatggaaattggtcactctgaaacgttcttggaagtgaaa 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47515169 gttacacttgcttattgaaatggacgtgactttcatgagggagagtggagaatctttcacaatggaaattggtcactctgaaacgttcttggaagtgaaa 47515070  T
Q  515 aagaaaatagaaaagcaccataacattcccgtttcaaagcaagtgttcttcttcaatgatcaacttctccaagatgatcaaataatctggctaagtggct 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47515069 aagaaaatagaaaagcaccataacattcccgtttcaaagcaagtgttcttcttcaatgatcaacttctccaagatgatcaaataatctggctaagtggct 47514970  T
Q  615 taactaacgcttcagccattcaccttcatctcac 648  Q
    ||||||||||||||||||||||||| ||||||||    
T  47514969 taactaacgcttcagccattcacctccatctcac 47514936  T

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