View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17735_low_5 (Length: 432)
Name: NF17735_low_5
Description: NF17735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17735_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 96 - 424
Target Start/End: Complemental strand, 38847159 - 38846828
Alignment:
| Q |
96 |
gatagagcattatggggtcgttagatccatatatccgacgccactcagtgagacaatgcttgatagtctgttattatttgtttatttgatatgaatcgtg |
195 |
Q |
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| T |
38847159 |
gatagatcattatggggtcgttagatccatatatccgacgccactcagtgagacaatgcttgatagtctgttatcatttgtttatttgatatgaatcatg |
38847060 |
T |
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| Q |
196 |
tgttttgtgttttgttacagtcgactagtattatgtttacatattgttagttgttccctgtttgattgattgatacaatgatattgagtatta-taattt |
294 |
Q |
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| T |
38847059 |
tgttttgtgttttgttacagtcgactagtattatgtttacatattgttagttgttccctgtttgattgattgatacaatgatattgagtactaataatct |
38846960 |
T |
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| Q |
295 |
actaaaaacagttaattaattaaatttctatagtttaaatttgaaatgtgtgtaa------tttggattgttgtggtgattagggtggtgccaagaaggt |
388 |
Q |
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| T |
38846959 |
actaaaaacagttgattag----atttctatagtttaaatttgaaatgtgtgtaatttgaatttggattgttgtggtgattagggtggtgccaagaaggt |
38846864 |
T |
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| Q |
389 |
tgtcatttctgctcccagcaaagatgcacctatgtt |
424 |
Q |
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| T |
38846863 |
tgtcatttctgctcccagcaaagatgcacctatgtt |
38846828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 38847254 - 38847211
Alignment:
| Q |
1 |
tgttttcactgacaaggataaagctgctgctcacttgaaggttc |
44 |
Q |
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| T |
38847254 |
tgttttcactgacaaggataaagctgctgctcacttgaaggttc |
38847211 |
T |
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