View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17735_low_6 (Length: 377)
Name: NF17735_low_6
Description: NF17735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17735_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 7e-62; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 7278230 - 7278370
Alignment:
| Q |
19 |
gctccaccctttgtgtgagagatgtaagaagtgttgtttgcttttcattcctctcaaataattgtgacatcatttccatcatcttttcattgtcctccat |
118 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
7278230 |
gctccactctttgtgtaagagatgtaagaagtgttgtttgcttctcattcctctcaaataattgtgccatcatttccatcatcttctcattgtcctccat |
7278329 |
T |
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| Q |
119 |
catccttttcaacatttttctattccctccatcttcttcct |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278330 |
catccttttcaacatttttctattccctccatcttcttcct |
7278370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 7375609 - 7375469
Alignment:
| Q |
19 |
gctccaccctttgtgtgagagatgtaagaagtgttgtttgcttttcattcctctcaaataattgtgacatcatttccatcatcttttcattgtcctccat |
118 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
7375609 |
gctccactctttgtgtaagagatgtaagaagtgttgtttgcttctcattcctctcaaataattgtgccatcatttccatcatcttctcattgtcctccat |
7375510 |
T |
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| Q |
119 |
catccttttcaacatttttctattccctccatcttcttcct |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375509 |
catccttttcaacatttttctattccctccatcttcttcct |
7375469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 187 - 317
Target Start/End: Original strand, 7278419 - 7278549
Alignment:
| Q |
187 |
ctttcacatccacactgtcctcaattccttcctcccccaaacttgttcccacactctcttccttctcttctacctccatcttcttcacatcctcattggt |
286 |
Q |
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|||||||||| ||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7278419 |
ctttcacatctacactttccttaattccttcctccaccaaacttgttcccacactctcttccttctcttctacctccatcttcttcacatcctcattgtt |
7278518 |
T |
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| Q |
287 |
ctcctcattccccaaagcttcaaatttttca |
317 |
Q |
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| T |
7278519 |
ctcctcattccccaaagcttcaaatttttca |
7278549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 187 - 317
Target Start/End: Complemental strand, 7375420 - 7375290
Alignment:
| Q |
187 |
ctttcacatccacactgtcctcaattccttcctcccccaaacttgttcccacactctcttccttctcttctacctccatcttcttcacatcctcattggt |
286 |
Q |
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|||||||||| ||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7375420 |
ctttcacatctacactttccttaattccttcctccaccaaacttgttcccacactctcttccttctcttctacctccatcttcttcacatcctcattgtt |
7375321 |
T |
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| Q |
287 |
ctcctcattccccaaagcttcaaatttttca |
317 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
7375320 |
ctcctcattccccaaagcttcaaatttttca |
7375290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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