View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17736_low_1 (Length: 528)
Name: NF17736_low_1
Description: NF17736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17736_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 36513286 - 36513546
Alignment:
| Q |
13 |
tgtggaggtgtggtcctaagaccatagcaagatattattgtttggttttccttgttcttgatgtgtgcacacaattactatgaaacttgcatgtttgtat |
112 |
Q |
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| T |
36513286 |
tgtggaggtgtggtcctaagaccatagcaagatattattgtttggttttccttgttcttgatgtgtgcacacaattactatgaaacttgcatgtttgtat |
36513385 |
T |
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| Q |
113 |
tgattacgactctaaggttgatgtgaaattggttttaaatgcttcaacaataaatatcgctacttcaaatgtgtttttgtggagctaatacatttgacta |
212 |
Q |
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| T |
36513386 |
tgattacgactctaaggttgatgtgaaattggttttaaatgcttcaacaataaatatcgctacttcaaatgtgtttttgtgaagctaatacatttgacta |
36513485 |
T |
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| Q |
213 |
atttcgaataaacattttatattattctttttttagttacaatgaaaaatgagacaacaag |
273 |
Q |
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| T |
36513486 |
atttcgaataaacattttatattattctttttttagttacaatgaaaaatgagacaacaag |
36513546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 334 - 528
Target Start/End: Original strand, 36513606 - 36513809
Alignment:
| Q |
334 |
aggttccattagcgtcattctaagaaagttgagcagcccaactaggggagaagcgtgaatgaggagatcaacatatgaagaaactcaaagttttgcgaag |
433 |
Q |
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| T |
36513606 |
aggttccattagcgtcattctaataaagttgagcagcccagctaggggagaagcgtgaatgaggagatcaacatctgaagaaactcaaagttttgcgaag |
36513705 |
T |
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| Q |
434 |
aatcggcgcatcggttcccttctctgagagtgtgccaaattgtgacattaatttgatga---------tttacgtcttgtataagaacggtatagatgtg |
524 |
Q |
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| T |
36513706 |
aatcggcgcaccggtttccttctctgagagtgtgccaaattgtaacattaatttgatgaagtggctcttttatgtcttgtataagaacggtatagacgtg |
36513805 |
T |
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| Q |
525 |
atat |
528 |
Q |
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| T |
36513806 |
atat |
36513809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 483
Target Start/End: Complemental strand, 43777701 - 43777568
Alignment:
| Q |
351 |
ttctaagaaagttgagcagcccaactaggggagaagcgtgaatgaggagatcaacatatgaagaaac-tcaaagttttgcgaagaatcggcgcatcggtt |
449 |
Q |
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| T |
43777701 |
ttctaagaaggttgagcagcccagttgggaaagaagcatgaatgaggagatcaacatccgaagaagcttcaaactttgtcaaaaaatcgatgcaccagtt |
43777602 |
T |
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| Q |
450 |
cccttctctgagagtgtgccaaattgtgacatta |
483 |
Q |
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| T |
43777601 |
cccttttctgagagtgtgacaaattatgacatta |
43777568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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