View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17736_low_2 (Length: 371)
Name: NF17736_low_2
Description: NF17736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17736_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 52559541 - 52559883
Alignment:
| Q |
20 |
agacagactgattatgtcatccagaaaatgccacaaaatgtattaatgattagataataatatgaagatgcccgtgtgacttgcatgtttattatattct |
119 |
Q |
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| T |
52559541 |
agacagactgattatgtcatccagaaaatgccacagaatgaattaatgattagataataatatgaagatgcccgtgtgacttgcatgtttattatattct |
52559640 |
T |
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| Q |
120 |
gaaccaaaatttataatatgacgttactactgaggcagtggccaagtaaactgttacggcatttgtaatagtagtaattccaattaataactaaaggtct |
219 |
Q |
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| T |
52559641 |
gaaccaaaatttataatatgacattactactgaggcagtggccaagtaaactgttacggcatatgtaatagtagtaattccaattaataactaaaggtct |
52559740 |
T |
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| Q |
220 |
gattggattctttagtcgagtttaactattatcataaacacttgaaattgttttgac-nnnnnnntaaacttgaaactgtttaaaagaacttaccagaac |
318 |
Q |
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| T |
52559741 |
gattggattctttagtcgagtttaactattatcataaacacttaaaattgttttgacaaaaaaaataaacttgaaactgtttagaagaacttaccagaac |
52559840 |
T |
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| Q |
319 |
aacttatactgtccataaactgtttaatttatttccacaggtt |
361 |
Q |
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| T |
52559841 |
aacttatactgtccataaactgtttaatttatttccacaggtt |
52559883 |
T |
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