View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17736_low_4 (Length: 295)
Name: NF17736_low_4
Description: NF17736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17736_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 57 - 285
Target Start/End: Original strand, 39174395 - 39174622
Alignment:
| Q |
57 |
cgctaaatgtaattgtgctaagtcccatggccttattgaaagttaatttatgattcaaaaatctgaaacttatgcttaaagtctctctaccgactctcaa |
156 |
Q |
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| T |
39174395 |
cgctaaatgtaattgtgctaagtcccatggccttattgaaagttaatttatgattcaaaaatctgaaacttatgcttaaagtctctctaccgactctcaa |
39174494 |
T |
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| Q |
157 |
tttgataacaaaagtgtaaactacttatcctattgaatagtataatattcatataacattatttccaatacattaaactgatatataatacttgaaagaa |
256 |
Q |
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| T |
39174495 |
tttgataacaaaagtgtaaactacttatcctattgaatcgtat-atattcatataacattatttccaatacattacaatgatatataatacttgaaagaa |
39174593 |
T |
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| Q |
257 |
cgaaaaagaaatcattgaattggtctctg |
285 |
Q |
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| T |
39174594 |
cgaaaaagaaatcattgaattggtctctg |
39174622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 39174329 - 39174372
Alignment:
| Q |
18 |
aaaaatacactaataccccagtagcaattaattgttgctcgcta |
61 |
Q |
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| T |
39174329 |
aaaaatacactaataccccagtagcaattaattgttgcccgcta |
39174372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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