View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_high_12 (Length: 448)
Name: NF17737_high_12
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 31008734 - 31008636
Alignment:
| Q |
219 |
aaacttttgaagccaacaacatgcatttaacttccatgaaattaaaaacacataaaatatgaactaacaaaatattgacaaacataaagatacaaccat |
317 |
Q |
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| T |
31008734 |
aaacttttgaagccaacaacatgcatttaacttccatgaaattaaaaatacataaaatatgaactaataaaatattgacaaacataaagatacaaccat |
31008636 |
T |
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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 31008849 - 31008808
Alignment:
| Q |
106 |
ttaaactgtttacatatgaagttgaaagaacttactgccatt |
147 |
Q |
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| T |
31008849 |
ttaaactgtttacatatgaagttgaaagtacttactgccatt |
31008808 |
T |
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