View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_high_13 (Length: 445)
Name: NF17737_high_13
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Original strand, 47569047 - 47569456
Alignment:
| Q |
18 |
caaattaatttgatgtccccccactctgataccatacacatgtagttccattttttgaattattaccggtattttcttgttgggaaaaacatgcaatact |
117 |
Q |
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| T |
47569047 |
caaattaatttgatgtccccccactctgataccatacacatgtagttccattttttgaattattaccggtattttcttgttgggaaaaacatgcaatact |
47569146 |
T |
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| Q |
118 |
gatctaaatatgtttatagtttgcacatccttaggtttggctttcttaggtttaccaattcattaatcttaagagtacctttgatttgctaaaaacaaac |
217 |
Q |
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| T |
47569147 |
gatctaaatatgtttagagtttgcacatccttagttttgactttcttaggtttaccaattcataaatcttaagagtgcctttgatttgctaaaaacaaac |
47569246 |
T |
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| Q |
218 |
atactagacaacacagcttcagttgcatcgtatttgattggaaaattgtttttgaaacgagataaaaactgaaatttatatacgtttctcactaaattac |
317 |
Q |
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| T |
47569247 |
atactagacaacacaacttcagttgtatcgtatttgattgaaaaattgtttttgaaacgagataaaaactgtaatttatatacgtttctcgctaaattac |
47569346 |
T |
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| Q |
318 |
gagacaactttttatctcatgtatgtataagctatctaaaatagcattctatttactatattcccctcatctctccctccctccctacctctcatacatg |
417 |
Q |
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| T |
47569347 |
gagacaactttttatctc----atatataagctatctaaaatagcattttatttactaaattcctctcatctctccctccctccctacctctcatacatg |
47569442 |
T |
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| Q |
418 |
ttgcactatatctc |
431 |
Q |
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| T |
47569443 |
ttgcactatatctc |
47569456 |
T |
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