View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_high_16 (Length: 433)
Name: NF17737_high_16
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 411
Target Start/End: Original strand, 30818791 - 30819194
Alignment:
| Q |
19 |
aattactcttctattctcatgaagaagttcccataccaccgaacttagaaaccatgtttcttctgatcataacgggggagaagatatagaatttgttggc |
118 |
Q |
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| T |
30818791 |
aattactcttctattctcatgaagaagttcccataccaccgaacttagaaaccatgtttcttctgatcataatgggggagaagatatagaatttgttggc |
30818890 |
T |
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| Q |
119 |
tattgcatacagacagaatacctgttttgaaatattataattgtagttttgtcggtttctaacatatggttaaaatatac----annnnnnnngaaggaa |
214 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
30818891 |
tattgcatatagactgaatacctgttttgaaatattataattgtagttttgtcggtttctaacatatggttaaaatatactgtttttttttttgaagaaa |
30818990 |
T |
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| Q |
215 |
tggttaaaatatacatgatttcgacgaaattctacaatttatgttttgatcacaa----nnnnnnnnnngtcaattatgatcattataannnnnnnaaca |
310 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
30818991 |
tggttaaaatatacataatttcgacgaaattctacaatttatgttttgatcacaattttttttttttttgtcaattatgatcattataatttttttaaca |
30819090 |
T |
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| Q |
311 |
aacaaaaatgagatatattatcaca---aaaaagatctactctttatcacaagatgtgcatagaatagcagaccaaaatacaacaaactattcttgataa |
407 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
30819091 |
aacaaaaatgagatatattatcacaaagaaaaagatctactctctatcacaagatgtgcatagaatagcagaccaaaatacagcaaactattcttaataa |
30819190 |
T |
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| Q |
408 |
atac |
411 |
Q |
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|||| |
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| T |
30819191 |
atac |
30819194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 30808237 - 30808329
Alignment:
| Q |
19 |
aattactcttctattctcatgaagaagttcccataccaccgaacttagaaaccatgtttcttctgatcataacgggggagaagatatagaatt |
111 |
Q |
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| T |
30808237 |
aattactcgtctattctcatgaagaagttcccataccaccgaacttagaaaccatgtttcttcttatcataatgggggagaagatatagaatt |
30808329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 30808421 - 30808471
Alignment:
| Q |
218 |
ttaaaatatacatgatttcgacgaaattctacaatttatgttttgatcaca |
268 |
Q |
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| T |
30808421 |
ttaaaatatacatgatttcgacgaaattctacaatttatgttttgatcaca |
30808471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 394
Target Start/End: Original strand, 14550909 - 14550998
Alignment:
| Q |
308 |
acaaacaaaaatgagatatattatcacaaa---aaagatctactctttatcacaagatgtgcatagaatagcagaccaaaatacaacaaa |
394 |
Q |
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||||||||||||||||||||||| || ||| | | ||||||||||| ||||||||||||| |||| |||| | |||||||||||||| |
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| T |
14550909 |
acaaacaaaaatgagatatattaccataaagggagggctctactctttagcacaagatgtgcaaagaagagcaaagcaaaatacaacaaa |
14550998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 337
Target Start/End: Complemental strand, 29246401 - 29246372
Alignment:
| Q |
308 |
acaaacaaaaatgagatatattatcacaaa |
337 |
Q |
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| T |
29246401 |
acaaacaaaaatgagatatattatcacaaa |
29246372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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