View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_high_17 (Length: 417)
Name: NF17737_high_17
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 23 - 407
Target Start/End: Complemental strand, 5401943 - 5401556
Alignment:
| Q |
23 |
ctcacacaagactcaaaaatggataatacctcnnnnnnncgatgcaactgagttgaggtcggg-acacaagtatccaaatttcctttgagtaatgtacat |
121 |
Q |
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| T |
5401943 |
ctcacacaagactcaaaaatggataatacctcagaataacggtgcaaccgagttgaggtcggggacacaagtatgcaaatttcctttgagtaatgtacat |
5401844 |
T |
|
| Q |
122 |
gtaaaggcttaaaaagtgtaaaataaaataattg---ataaacaccaacagaataataatagtacctatcatgagcttggaatgaacataaaccatgaat |
218 |
Q |
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| T |
5401843 |
gtaaagacc-aaaaagtggaaaataaaataatgataaataaacactaacagaataataatattacctatcatgagcttggaatgaacataaaccatgaat |
5401745 |
T |
|
| Q |
219 |
cttctannnnnnngtgcattcaagtattgtgtttcaggatgaggagaatctaatggaagatactctccttttcccttatgctccctatttgcaagacaaa |
318 |
Q |
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| T |
5401744 |
cttctatttttctgtgcattccagtattgtgtttcaggataaggagaatccaatggaagatactctccttttcccttatgctccctatttgcaagacaaa |
5401645 |
T |
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| Q |
319 |
agaaattcaagtagtcttttggatgtcctatttcaccactttcttttattgcttcaccaatcaatctatacatcattgccacaggttct |
407 |
Q |
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| T |
5401644 |
agaaattcaagtagtcttttggatgtcctatttcaccactttctttaattgcttcaccaatcaatctatacatcattgccacagtttct |
5401556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 181 - 396
Target Start/End: Original strand, 43052059 - 43052274
Alignment:
| Q |
181 |
tacctatcatgagcttggaatgaacataaaccatgaatcttctannnnnnngtgcattcaagtattgtgtttcaggatgaggagaatctaatggaagata |
280 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| ||||| || | ||||| || |||||| ||||||||| | |||||||| |
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| T |
43052059 |
tacctatcatgagcttggagtgaacataaaccatgaatcttctatttttctgtgcactccaatattgagtatcaggaagaggagaatgtggaggaagata |
43052158 |
T |
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| Q |
281 |
ctctccttttcccttatgctccctatttgcaagacaaaagaaattcaagtagtcttttggatgtcctatttcaccactttcttttattgcttcaccaatc |
380 |
Q |
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||| | ||| |||| | || ||||||||||| ||||||||||||||||| ||| ||||||||||| |||||||||||| | |||||||| |||||| |
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| T |
43052159 |
ttcttcattttccttcttttctctatttgcaaggcaaaagaaattcaagtaatctcttggatgtcctggctcaccactttctatgattgcttctccaatc |
43052258 |
T |
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| Q |
381 |
aatctatacatcattg |
396 |
Q |
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|| |||||||||||| |
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| T |
43052259 |
aacttatacatcattg |
43052274 |
T |
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