View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17737_high_19 (Length: 403)
Name: NF17737_high_19
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_high_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 39859042 - 39858673
Alignment:
| Q |
16 |
agaaaaagcacaaattaaagaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39859042 |
agaaaaagcacaaattaaagaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctt |
39858943 |
T |
|
| Q |
116 |
tagaaacatgctgttaattgctcaatcagattgtatttttatttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39858942 |
tagaaacatgctgttaattgctcaatcagattgtatttttatttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcag |
39858843 |
T |
|
| Q |
216 |
aacaaattggaaatgatatatattttgatctcgtagaccttgacaaagtgaggagtttccgtgttgaaaagcagacgtcatttaacgttttcaaggtatc |
315 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39858842 |
aacaaattggaaatgacatatattttgatctcgtagaccttgacaaagtgaggagtttccgtgttaaaaagcagacgtcatttaacgttttcaaggtatc |
39858743 |
T |
|
| Q |
316 |
atatcatcagttacactcttacattggaaaattagacaaaaaccgtatcttgttaattgaggattgaaat |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39858742 |
atatcatcagttacactcttacattggaaaattagacaaaaaccgtatcttgttaattgaggattgaaat |
39858673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 56 - 383
Target Start/End: Complemental strand, 39912883 - 39912560
Alignment:
| Q |
56 |
tacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctttagaaacatgctgttaattgctcaatcagattgtattttt |
155 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| ||| || || || |||||||| ||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
39912883 |
tacactattataaaggtgttctaagcttgcttcactataaattagtattgtttgt--ctttagaaacatgctgttaattgctcaatcatattgtatttat |
39912786 |
T |
|
| Q |
156 |
atttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcagaacaaattggaaatgatatatattttgatctcgtagacct |
255 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||| |||||||||||| |||| ||||||| |
|
|
| T |
39912785 |
atttatatatactgataacacataatacttcttaggtgatacgagatgaagaccttgcagaacagattggaaaggatatatattttaatcttgtagacca |
39912686 |
T |
|
| Q |
256 |
tgacaaagtgaggagtttccgtgttgaaaagcagacgtcatttaacgttttcaaggtatcatatcatcagttacactcttac-attggaaaattagacaa |
354 |
Q |
| |
|
|| ||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||| ||||||| |||| | ||||||||||| | |
|
|
| T |
39912685 |
tgggaaagtgaggagtttctgtgttcaaaagcagacatcatttaacgttttcaaggtatc--atcatcaattacactattacaacgggaaaattaga-ga |
39912589 |
T |
|
| Q |
355 |
aaaccgtatcttgttaattgaggattgaa |
383 |
Q |
| |
|
|||| | |||||||||||||| ||||||| |
|
|
| T |
39912588 |
aaacggaatcttgttaattgatgattgaa |
39912560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 39866657 - 39866298
Alignment:
| Q |
18 |
aaaaagcacaaat-taaagaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtcttt |
116 |
Q |
| |
|
|||||||||||| |||||||| || |||||||||| | ||||||| ||||||||| || |||||||||| |||||| |||||||||||||| ||||| |
|
|
| T |
39866657 |
aaaaagcacaaaaataaagaaaaggaagagactcacctccacactattataaaggtgatctaagcttgcttccctagatatttgttttgtttgtatcttt |
39866558 |
T |
|
| Q |
117 |
agaaacatgctgttaattgctcaatcagattgtatttttatttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcaga |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||| |||||||| | | ||||||||| |||| ||||||||||||||||||||| | |
|
|
| T |
39866557 |
agaaacatgctgttaacggctcaatcagattgtatttatatttat----actgataataaaaaatacttctcaggttgtacgagatgaagaccttgcaaa |
39866462 |
T |
|
| Q |
217 |
acaaattggaaatgatatatattttgatctcgtagaccttgacaaagtgaggagtttccgtgttgaaaagcagacgtcatttaacgttttcaaggtatca |
316 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||| |||||||||| ||||||||||||| |
|
|
| T |
39866461 |
acaggttggaaagtatatatattttgatctcgtagactatgacaaagtgaggattttccatgttcaaaagcagatgtcatttaacattttcaaggtatc- |
39866363 |
T |
|
| Q |
317 |
tatcatcagttacactcttacattggaaaattagacaaaaaccgtatcttgttaattgaggattga |
382 |
Q |
| |
|
||||||||||||| |||||| ||| ||||| ||| ||| | | ||||| | ||||||||||||| |
|
|
| T |
39866362 |
-atcatcagttacagtcttacgttgtaaaataagaggaaatctgaatcttatcaattgaggattga |
39866298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 34 - 345
Target Start/End: Complemental strand, 39849658 - 39849321
Alignment:
| Q |
34 |
agaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctaga-attttgttttgtttgtgtctttagaaacatgctgttaa |
132 |
Q |
| |
|
|||||||||||| | | ||||||||||||| |||||||||||| | |||||||| |||||| || |||||||||||||||||||| ||||||||| |||| |
|
|
| T |
39849658 |
agaaatggcagaaaataacttgtacactattataaaggtgttctatgcttgcttccctagatatgttgttttgtttgtgtctttaaaaacatgctcttaa |
39849559 |
T |
|
| Q |
133 |
ttgctcaatcagattgtatttttatttat--------------ttatactgataacat-----------ataatacttctaaggtggtacgagatgaaga |
207 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||| | |||||||||| |||||||||||||||| || |
|
|
| T |
39849558 |
ttgctcaatcagattgtatttatatttatatatttatatttatttatactgataacttgataagatattataatacttcctaggtggtacgagatgagga |
39849459 |
T |
|
| Q |
208 |
ccttgcagaacaaattggaaatgatatatattttgatctcgtagaccttgacaaagtgaggagtttccgtgttgaaaagcagacgtcatttaacgttttc |
307 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
39849458 |
ctttgcagaacaaattggaaatgatttatattttgatcttgtagaccttgataaagtgaggagtttccgtgttcaaaagcaggcgtcgtttaacgttttc |
39849359 |
T |
|
| Q |
308 |
aaggtatcatatcatcagttacactcttacattggaaa |
345 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
39849358 |
aaggtatcgtatcatcggttactctcttacattggaaa |
39849321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 31 - 290
Target Start/End: Complemental strand, 39869349 - 39869096
Alignment:
| Q |
31 |
taaagaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctttagaaacatgctgtt |
130 |
Q |
| |
|
|||||||||||||||||||||| | |||| | | ||||||||||| ||||| ||||||| |||| ||| |||||||||| ||||||| |||||||||| |
|
|
| T |
39869349 |
taaagaaatggcagagactcacctctacatttttataaaggtgttgtaagctggctttccgagaaatttattttgtttgt--ctttagagacatgctgtt |
39869252 |
T |
|
| Q |
131 |
aattgctcaatcagattgtatttttatttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcagaacaaattggaaatg |
230 |
Q |
| |
|
|| | | |||||||||| ||| | | || || |||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |||||||| | |
|
|
| T |
39869251 |
aacttcccaatcagattatatctatgttaat----actgataacatataatacttcttaggtagtacgagatgaagacctggcagaacagattggaaagg |
39869156 |
T |
|
| Q |
231 |
atatatattttgatctcgtagaccttgacaaagtgaggagtttccgtgttgaaaagcaga |
290 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||| |||||||| ||||||||| |||| |
|
|
| T |
39869155 |
atatatgttttgatctcgtagaccttggaaaagtggggagtttctatgttgaaaaacaga |
39869096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 31 - 383
Target Start/End: Original strand, 38967075 - 38967416
Alignment:
| Q |
31 |
taaagaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctttagaaacatgc-tgt |
129 |
Q |
| |
|
|||||||| ||||||| |||| | |||||||| |||||||||||| || | |||||| |||||| || | || || |||||||||||||| | | ||| |
|
|
| T |
38967075 |
taaagaaaaggcagaggctcatctctacactattataaaggtgttctaaacatgctttactagaaattaatattattagtgtctttagaaactttcatgt |
38967174 |
T |
|
| Q |
130 |
taattgctcaatcagattgtatttttatttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcagaacaaattggaaat |
229 |
Q |
| |
|
||||||||||||| | ||| ||||| |||||| ||||| |||||||||||| |||||| ||| |||||||||||||||||||| || ||||| |
|
|
| T |
38967175 |
caattgctcaatcataatgt---tttat--atttatgttgata---tataatacttcttaggtggcacgggatgaagaccttgcagaacagataggaaag |
38967266 |
T |
|
| Q |
230 |
gatatatattttgatctcgtagaccttgacaaagtgaggagtttccgtgttgaaaagcagacgtcatttaacgttttcaaggtatcatatcatcagttac |
329 |
Q |
| |
|
||||| ||||||||||| ||||||| |||||| ||||| |||||||||||| | |||||||| || ||| |||||||||||||||| ||||||| |||| |
|
|
| T |
38967267 |
gatatgtattttgatcttgtagaccatgacaatgtgagcagtttccgtgttcagaagcagacatc-tttcacgttttcaaggtatc--atcatcaattac |
38967363 |
T |
|
| Q |
330 |
actcttacattggaaaattagacaaaaaccgtatcttgttaattgaggattgaa |
383 |
Q |
| |
|
||| | | |||||||||| | ||||| | |||||||||||||||||||||| |
|
|
| T |
38967364 |
actatgcaaatggaaaatta-aagaaaacggaatcttgttaattgaggattgaa |
38967416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 166 - 317
Target Start/End: Complemental strand, 37467827 - 37467679
Alignment:
| Q |
166 |
actgataacatataatacttctaaggtggtacgagatgaagaccttgcagaacaaattggaaatgatatatattttgatctcgtagaccttgacaaagtg |
265 |
Q |
| |
|
||||||||||||| |||||| |||||| ||| |||||||| |||| |||||| |||||||| ||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
37467827 |
actgataacatatgatactt---aggtggcacgggatgaagatcttggagaacagattggaaaggatatatattttgatcttgtagaacatgacaaagtg |
37467731 |
T |
|
| Q |
266 |
aggagtttccgtgttgaaaagcagacgtcatttaacgttttcaaggtatcat |
317 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
37467730 |
cggagtttccgtgtacaaaagcagacaccatttaacgttttcaaggtatcat |
37467679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 42 - 317
Target Start/End: Original strand, 39734556 - 39734815
Alignment:
| Q |
42 |
cagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctttagaaacatgctgttaattgctcaat |
141 |
Q |
| |
|
||||| ||||| | |||||||| |||| ||||||| |||||||||| ||||||| | || ||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
39734556 |
cagaggctcacctctacactattataagggtgttctaagcttgcttccctagaaactagtaatgtttgtttctttagattcatcttgttaattgctcaat |
39734655 |
T |
|
| Q |
142 |
cagattgtatttttatttatttatactgataacatataatacttctaaggtggtacgagatgaagaccttgcagaacaaattggaaatgatatatatttt |
241 |
Q |
| |
|
|||||||||||| | ||||| ||||||||| || ||||||||||||||||||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
39734656 |
cagattgtatttatgtttat----actgataactta------------ggtggtacgagatgaagaccttgcacaacagattggaaaggatatatatttt |
39734739 |
T |
|
| Q |
242 |
gatctcgtagaccttgacaaagtgaggagtttccgtgttgaaaagcagacgtcatttaacgttttcaaggtatcat |
317 |
Q |
| |
|
||||| || |||| |||||||||||| ||||| |||||| ||| | ||| ||||||| | |||||||||||||| |
|
|
| T |
39734740 |
gatcttgttgaccctgacaaagtgagcagttttcgtgttcccaagaatacgacatttaaagatttcaaggtatcat |
39734815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 180 - 317
Target Start/End: Complemental strand, 39899837 - 39899700
Alignment:
| Q |
180 |
atacttctaaggtggtacgagatgaagaccttgcagaacaaattggaaatgatatatattttgatctcgtagaccttgacaaagtgaggagtttccgtgt |
279 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||| |||| |||||||| ||||||||||||||||| ||||||| |||||||||| ||| |||| ||| |
|
|
| T |
39899837 |
atacttcttaggtggtacgagacgaagaccttgcaaaacagattggaaaggatatatattttgatcttgtagaccatgacaaagtggggattttctatgt |
39899738 |
T |
|
| Q |
280 |
tgaaaagcagacgtcatttaacgttttcaaggtatcat |
317 |
Q |
| |
|
| ||| ||||| |||||||||| ||| |||||||||| |
|
|
| T |
39899737 |
tcaaaggcagaaatcatttaacgatttaaaggtatcat |
39899700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 37467993 - 37467879
Alignment:
| Q |
35 |
gaaatggcagagactcacttgtacactatgataaaggtgttccaagcttgctttcctagaattttgttttgtttgtgtctttagaaacatgctgttaatt |
134 |
Q |
| |
|
|||| ||||||| ||||| | |||||||| |||||||||||| ||||| ||||||||||||| || ||||||||||||||| ||| ||||||| |||| |
|
|
| T |
37467993 |
gaaaaggcagaggctcacctctacactattataaaggtgttcttagcttcctttcctagaattgagtattgtttgtgtctttataaagatgctgtgaatt |
37467894 |
T |
|
| Q |
135 |
gctcaatcagattgt |
149 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
37467893 |
tctctatcagattgt |
37467879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 317
Target Start/End: Original strand, 39727642 - 39727677
Alignment:
| Q |
282 |
aaaagcagacgtcatttaacgttttcaaggtatcat |
317 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39727642 |
aaaagcagacgtcatttaatgttttcaaggtatcat |
39727677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 189 - 316
Target Start/End: Original strand, 36057877 - 36058004
Alignment:
| Q |
189 |
aggtggtacgagatgaagaccttgcagaacaaattggaaatgatatatattttgatctcgtagaccttgacaaagtgaggagtttccgtgttgaaaagca |
288 |
Q |
| |
|
|||||| ||| ||||||||| ||| || || || ||||| ||||| || |||||||| ||||||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
36057877 |
aggtggcacgggatgaagacattgaagggcagatgggaaaggatatctactttgatcttgtagaccacgacaaagtgagaagtttccgtgtacaaaagca |
36057976 |
T |
|
| Q |
289 |
gacgtcatttaacgttttcaaggtatca |
316 |
Q |
| |
|
||| | ||||| ||||||||||||||| |
|
|
| T |
36057977 |
gacaccttttaatgttttcaaggtatca |
36058004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University