View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17737_high_20 (Length: 402)

Name: NF17737_high_20
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17737_high_20
NF17737_high_20
[»] chr8 (5 HSPs)
chr8 (1-242)||(13074012-13074255)
chr8 (99-208)||(41940029-41940141)
chr8 (75-167)||(5950044-5950136)
chr8 (352-390)||(13074362-13074400)
chr8 (6-68)||(41939970-41940032)
[»] chr1 (3 HSPs)
chr1 (6-215)||(8326841-8327050)
chr1 (6-167)||(26762311-26762471)
chr1 (75-127)||(2688246-2688298)
[»] chr4 (4 HSPs)
chr4 (29-167)||(21121694-21121830)
chr4 (20-203)||(25100390-25100574)
chr4 (88-186)||(53813832-53813932)
chr4 (75-163)||(44206908-44206995)
[»] chr5 (1 HSPs)
chr5 (28-208)||(12566915-12567095)
[»] chr2 (2 HSPs)
chr2 (28-167)||(8216638-8216774)
chr2 (9-167)||(463857-464014)
[»] chr3 (1 HSPs)
chr3 (20-167)||(51663809-51663955)
[»] chr6 (3 HSPs)
chr6 (20-167)||(32191313-32191458)
chr6 (100-186)||(30892255-30892343)
chr6 (28-155)||(31304090-31304215)
[»] chr7 (1 HSPs)
chr7 (75-157)||(11203219-11203301)
[»] scaffold0174 (1 HSPs)
scaffold0174 (75-127)||(30776-30828)


Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 13074012 - 13074255
Alignment:
Q  1 cgcatcgaaaccatgttacaaaaaagtgtgaaaagtggacatccacaaaaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaa 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |  |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13074012 cgcagcgaaaccatgttacaaaaaagtgtgaaaagtggacatccgcttaaaacagttagagtttaaactatagacgaatggattgtccgtcaacacggaa 13074111  T
Q  101 accaatccaagtgccaacaaccccctgaatcaacagcagacatataatgctctttcgaacaaacaactcct--aaactcagatcgaggataagttcaatg 198  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||     
T  13074112 accaatccaaatgccaacaaccccctgaatcaacagcagacatataatgctctttcgaacaaacaactcgtaaaaactcagatcgaggataagttcaata 13074211  T
Q  199 cgtcataaactagacccattttcatgatatttgacaatatgcat 242  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  13074212 cgtcataaactagacccatttttatgatatttgacaatatgcat 13074255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 41940029 - 41940141
Alignment:
Q  99 aaaccaatccaagtgccaacaaccccctgaatcaacagcagacatataatgctctttcgaacaaacaactcct--aaactcagatcga-ggataagttca 195  Q
    |||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||| |||||||| | |  ||||||||||||| |||| ||||||    
T  41940029 aaaccaatccaagtcccaacaaccccctgaatcaacagcaggcataaaatgctctttcgagcaaacaacgcgtaaaaactcagatcgagggatgagttca 41940128  T
Q  196 atgcgtcataaac 208  Q
    || ||||| ||||    
T  41940129 atacgtcaaaaac 41940141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 167
Target Start/End: Original strand, 5950044 - 5950136
Alignment:
Q  75 cgaatggattgtccgtcaacacggaaaccaatccaagtgccaacaaccccctgaatcaacagcagacatataatgctctttcgaacaaacaac 167  Q
    ||||||||||| |||||||||||| | ||||| |||| ||| |||| ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  5950044 cgaatggattgaccgtcaacacggtatccaattcaagagcccacaatcccctgaatcaacagcagacataaaatgctctttcgagcaaacaac 5950136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 352 - 390
Target Start/End: Original strand, 13074362 - 13074400
Alignment:
Q  352 tcaattttttataattttatattaaacattaaagatatt 390  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13074362 tcaattttttataattttatattaaacattaaagatatt 13074400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 41939970 - 41940032
Alignment:
Q  6 cgaaaccatgttacaaaaaagtgtgaaaagtggacatccacaaaaaacaattagagtttaaac 68  Q
    |||||||| |||||||||||  ||||||| ||||||||| || | |||| |||||||||||||    
T  41939970 cgaaaccaggttacaaaaaaacgtgaaaattggacatccgcatagaacagttagagtttaaac 41940032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 6 - 215
Target Start/End: Original strand, 8326841 - 8327050
Alignment:
Q  6 cgaaaccatgttacaaaaaagtgtgaaaagtggacatccacaaaaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaa 105  Q
    |||||||| |||| ||||||  |||||||| ||||||| ||| | |||  |||||||||||||||  | ||||||||||| | |||||||||||||||||    
T  8326841 cgaaaccaggttaaaaaaaac-gtgaaaagaggacatctacatagaacggttagagtttaaacta--ggcgaatggattgactgtcaacacggaaaccaa 8326937  T
Q  106 tccaagtgccaacaaccccctgaatcaacagcagacatataatgctctttcgaacaaacaactcct--aaactcagatcga-ggataagttcaatgcgtc 202  Q
    |||||||||||||| ||||| ||||||||||||| |||| ||||||||||| | | |||||| | |  ||||||||||||| |||| |||||||| ||||    
T  8326938 tccaagtgccaacatccccccgaatcaacagcaggcataaaatgctctttcaagcgaacaacgcgtaaaaactcagatcgagggatgagttcaatacgtc 8327037  T
Q  203 ataaactagaccc 215  Q
    | |||| ||||||    
T  8327038 agaaaccagaccc 8327050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 6 - 167
Target Start/End: Complemental strand, 26762471 - 26762311
Alignment:
Q  6 cgaaaccatgttacaaaaaagtgtgaaaagtggacatccacaaaaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaa 105  Q
    ||||||||  ||||||||||| ||||||||||||||| | || | |||||||| ||| ||||   | | ||||||||||| |||||||||||| | ||||    
T  26762471 cgaaaccagattacaaaaaagcgtgaaaagtggacattcgcatagaacaattaaagtataaaac-tcggcgaatggattggccgtcaacacggtatccaa 26762373  T
Q  106 tccaagtgccaacaaccccctgaatcaacagcagacatataatgctctttcgaacaaacaac 167  Q
    |||||| ||| |||| |||||||||||||| |||||||| ||||||||||||| ||||||||    
T  26762372 tccaagagcccacaatcccctgaatcaacaacagacataaaatgctctttcgagcaaacaac 26762311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 2688246 - 2688298
Alignment:
Q  75 cgaatggattgtccgtcaacacggaaaccaatccaagtgccaacaaccccctg 127  Q
    ||||||||||| ||| |||||||| ||| |||||||| ||||||||| |||||    
T  2688246 cgaatggattgaccgccaacacggtaacaaatccaagcgccaacaactccctg 2688298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 21121830 - 21121694
Alignment:
Q  29 tgaaaagtggacatccacaaaaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaatccaagtgccaacaaccccctga 128  Q
    |||||||||| ||||  || | |||| |||||||||||||||  | ||||||||||| | |||||||||||||| |||||||||| |||||||||| |||    
T  21121830 tgaaaagtgggcatctgcatagaacagttagagtttaaacta--ggcgaatggattgactgtcaacacggaaactaatccaagtgtcaacaaccccttga 21121733  T
Q  129 atcaacagcagacatataatgctctttcgaacaaacaac 167  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  21121732 atcaacagcagacataaaatgctctttcgagcaaacaac 21121694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 25100574 - 25100390
Alignment:
Q  20 aaaaaagtgtgaaaagtggacatccacaaaaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaatccaagtgccaaca 119  Q
    ||||||||||||||||||||| ||| || | |||  ||||||||||||  || | ||||||||||  |||||||||||| ||||||||||||||||||||    
T  25100574 aaaaaagtgtgaaaagtggacctccgcatagaactgttagagtttaaa--attggcgaatggattagccgtcaacacggtaaccaatccaagtgccaaca 25100477  T
Q  120 accccctgaatcaacagcagacatataatgctctttcgaacaaacaactcct--aaactcagatcga-ggataagttcaatgcgtca 203  Q
    |||| ||| | ||||| ||  ||||  ||||||||||||||||||||  | |  ||||||||||||| |||| |||||||| |||||    
T  25100476 accctctgtaacaacaacatgcataagatgctctttcgaacaaacaaagcgtaaaaactcagatcgagggatgagttcaatacgtca 25100390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 88 - 186
Target Start/End: Original strand, 53813832 - 53813932
Alignment:
Q  88 cgtcaacacggaaaccaatccaagtgccaacaaccccctgaatcaacagcagacatataatgctctttcgaacaaacaactcct--aaactcagatcgag 185  Q
    ||||||| ||| |||| | |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||| | |  ||||||||||||||    
T  53813832 cgtcaacgcggtaacccacccaagtgccaacaaccccctgaatcagcagcaaacataaaatgctctttcgaacaaacaacgcgtaaaaactcagatcgag 53813931  T
Q  186 g 186  Q
    |    
T  53813932 g 53813932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 44206908 - 44206995
Alignment:
Q  75 cgaatggattgtccgtcaacacggaaaccaatccaagtgccaacaaccccctgaatcaacagcagacatataatgctctttcgaacaaa 163  Q
    ||||||||| | ||| |||||||| ||| |||||||||||||||| | | ||| ||||||||||  |||| ||||| ||||||||||||    
T  44206908 cgaatggatcgaccgccaacacggtaacaaatccaagtgccaacagctctctg-atcaacagcaagcataaaatgccctttcgaacaaa 44206995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 12567095 - 12566915
Alignment:
Q  28 gtgaaaagtggacatccacaaaaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaatccaagtgccaacaaccccctg 127  Q
    ||||||| ||||||| |||||| |||||| ||||||| |||  ||| || |||||||| ||||||||| |||| ||||| ||||| ||||||||||||||    
T  12567095 gtgaaaattggacattcacaaagaacaat-agagttttaacc-taggcggatggattggccgtcaacatggaa-ccaattcaagtaccaacaaccccctg 12566999  T
Q  128 aatcaacagcagacatataatgctctttcgaacaaacaactcct--aaactcagatcga-ggataagttcaatgcgtcataaac 208  Q
    |||||||| ||| ||||||||||||||||||||||||||| | |  ||||||||||||| |||| |||||||| ||||| ||||    
T  12566998 aatcaacaacaggcatataatgctctttcgaacaaacaacgcgtaaaaactcagatcgagggatgagttcaatacgtcagaaac 12566915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 28 - 167
Target Start/End: Original strand, 8216638 - 8216774
Alignment:
Q  28 gtgaaaagtggacatccacaaaaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaatccaagtgccaacaaccccctg 127  Q
    ||||||||||||||||| || | |||| ||| |||||  |  |||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  8216638 gtgaaaagtggacatccgcatagaacagttaaagttttgaa-ataggcgaatggattggccgtcaacacggaa-ccaatccaagtgccaacaaccccctg 8216735  T
Q  128 aatcaacagcagacatataatgctctttcgaacaaacaac 167  Q
    |||||| ||||| |||| ||||||||||||||||||||||    
T  8216736 aatcaatagcaggcata-aatgctctttcgaacaaacaac 8216774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 464014 - 463857
Alignment:
Q  9 aaccatgttacaaaaaagtgtgaaaagtggacatccacaaaaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaatcc 108  Q
    ||||| |||||||  ||| ||||||||||||||||| || | |||| ||||||||||||    || | ||||||||| ||||||||||||||||||||||    
T  464014 aaccaagttacaattaagcgtgaaaagtggacatcctcatagaacagttagagtttaaaacc-aggctaatggattgcccgtcaacacggaaaccaatcc 463916  T
Q  109 aagtgccaacaaccccctgaatcaacagcagacatataatgctctttcgaacaaacaac 167  Q
    |||| ||||||| |||||||||||| ||||| |||| |||  |||||||| ||||||||    
T  463915 aagtaccaacaagcccctgaatcaatagcaggcataaaatcatctttcgagcaaacaac 463857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 51663809 - 51663955
Alignment:
Q  20 aaaaaagtgtgaaaagtggacatccacaaaaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaatccaagtgccaaca 119  Q
    ||||||| ||||||||||||||| | || | |||||||| ||| ||||   | ||||||||||||| |||||||||||  | |||||||||| ||| |||    
T  51663809 aaaaaagcgtgaaaagtggacattcgcatagaacaattaaagtataaaac-tcgacgaatggattggccgtcaacacgatatccaatccaagagcccaca 51663907  T
Q  120 accccctgaatcaacagcagacatataatgctctttcgaacaaacaac 167  Q
    | ||||||||||||||| ||||||| ||||||||||||| ||||||||    
T  51663908 atcccctgaatcaacagtagacataaaatgctctttcgagcaaacaac 51663955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 32191458 - 32191313
Alignment:
Q  20 aaaaaagtgtgaaaagtggacatccacaaaaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaatccaagtgccaaca 119  Q
    ||||||| |||||||||| ||||||||| | ||   ||||||||| ||  |||| ||||||||||| |||||||||||||| ||||| |||||| ||||     
T  32191458 aaaaaagcgtgaaaagtgaacatccacatacaattgttagagttttaaa-ataggcgaatggattgaccgtcaacacggaa-ccaattcaagtgacaact 32191361  T
Q  120 accccctgaatcaacagcagacatataatgctctttcgaacaaacaac 167  Q
    ||||||||||||||| |||  ||| |||||||||||||||| ||||||    
T  32191360 accccctgaatcaactgcatgcatgtaatgctctttcgaactaacaac 32191313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 100 - 186
Target Start/End: Original strand, 30892255 - 30892343
Alignment:
Q  100 aaccaatccaagtgccaacaaccccctgaatcaacagcagacatataatgctctttcgaacaaacaactcct--aaactcagatcgagg 186  Q
    |||||||||||||||||||||||||||||||||||| ||  |||| |||||||||||||||||||||| | |  |||||||||||||||    
T  30892255 aaccaatccaagtgccaacaaccccctgaatcaacaacatgcatacaatgctctttcgaacaaacaacgcgtaaaaactcagatcgagg 30892343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 31304215 - 31304090
Alignment:
Q  28 gtgaaaagtggacatccacaaaaaacaattagagtttaaactatagacgaatggattgtccgtcaacacggaaaccaatccaagtgccaacaaccccctg 127  Q
    ||||||||||||||||  || | |||| ||||||||||||||   ||| |||||||||  |||| ||||   |||||||||||||| |||||  ||||||    
T  31304215 gtgaaaagtggacatctgcatagaacagttagagtttaaactt--gacaaatggattgatcgtcgacacactaaccaatccaagtgtcaacagtcccctg 31304118  T
Q  128 aatcaacagcagacatataatgctcttt 155  Q
    |||||||||||  |||| |||| |||||    
T  31304117 aatcaacagcaagcataaaatgttcttt 31304090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 11203219 - 11203301
Alignment:
Q  75 cgaatggattgtccgtcaacacggaaaccaatccaagtgccaacaaccccctgaatcaacagcagacatataatgctctttcg 157  Q
    ||||||||||  |||||||||||| |||||||||||||| ||||||||||||||| ||||| ||  ||||  |||||||||||    
T  11203219 cgaatggattagccgtcaacacggtaaccaatccaagtgtcaacaaccccctgaagcaacaacatgcataagatgctctttcg 11203301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 30828 - 30776
Alignment:
Q  75 cgaatggattgtccgtcaacacggaaaccaatccaagtgccaacaaccccctg 127  Q
    ||||||||||| |||||||||||| ||| |||||||||||||||||| |||||    
T  30828 cgaatggattgaccgtcaacacggtaacaaatccaagtgccaacaactccctg 30776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University