View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_high_22 (Length: 371)
Name: NF17737_high_22
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 3 - 337
Target Start/End: Complemental strand, 44220837 - 44220501
Alignment:
| Q |
3 |
catgtccaagaatataaatgatgtaatacttttgttgtattaatttgagttatcattgaaatatatt--gaggccaaccttttataatcacttgagttct |
100 |
Q |
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| T |
44220837 |
catgtacaagcatataaatgatgtaatacttttgttgtattaatttgagttgtcattgaaatatattttgaggccaaccttttataatcacttgagttct |
44220738 |
T |
|
| Q |
101 |
tatttcttcttctcttgataattgatatgcactctcaatgctgaatttgaatgctagaagatatgcctgagctgtcaatctatcaagtgatctagactta |
200 |
Q |
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| T |
44220737 |
tatttcttcttctcttgataattgatatgcactctcaatgctgaatttgaatgctagaagatatgcctgagctgtcaatctatcaagtgatctagactta |
44220638 |
T |
|
| Q |
201 |
attttcctagtcaaggaaggaatctatgcaaaattatgtgtatgcagtgttataccccgctaactagttttagtaaataaaaagttttttcagaactcag |
300 |
Q |
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| T |
44220637 |
attttcctagtcaaggaaggaatctatgcaaaattatgtgtatgcagtgttataccccgctaactagttttagtaaataaaaagttttttcagaactcag |
44220538 |
T |
|
| Q |
301 |
ttttatataaacactaattcaattgatattttctatt |
337 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||| |
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| T |
44220537 |
ttttatataaacactaattcaattgatattctctatt |
44220501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 337
Target Start/End: Complemental strand, 44208599 - 44208270
Alignment:
| Q |
14 |
atataaatgatgtaatacttttgttgtattaatttgagttatcattgaaatatatt--gaggccaa-ccttttataatcacttgagttcttatttct--- |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| ||||| |||||||||| |||||| | |||| |
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| T |
44208599 |
atataaatgatgtaatacttttgttgtattaatttgagtaatcattggaatatattttgaggccaaacctttaataatcactttagttctgaattctcta |
44208500 |
T |
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| Q |
108 |
--tcttctcttgataattgatatgcactctcaatgctgaatttgaatgctagaagatatgcctgagctgtcaatctatcaagtgatctagacttaatttt |
205 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44208499 |
gttcttctcttgataattgatatgcactcttaatgctgaatttgcacgctagaagatatgcctgagctgtcaatctatcaagtgatctagacttaatttt |
44208400 |
T |
|
| Q |
206 |
cctagtcaaggaaggaatctatgcaaaattatgtgtatgcagtgttataccccgctaactagttttagtaaataaaaagttttttcagaactcagtttta |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| |
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| T |
44208399 |
cctagtcaaggaaggaatctatgcaaaattatgtgtatgcattgttataccccgctaactagtttttgtaaataaaaggttttttcaaaactcagtttta |
44208300 |
T |
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| Q |
306 |
tataaacactaattcaattgatattttctatt |
337 |
Q |
| |
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||| |||||||| ||||||||||| |||||| |
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| T |
44208299 |
tat--acactaatccaattgatattctctatt |
44208270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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