View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_high_32 (Length: 317)
Name: NF17737_high_32
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 41824867 - 41825157
Alignment:
| Q |
19 |
gaaacctctgttggtgacccaaaaagaaaaggatcaccatggcatagaatgaaatggacagatacaatggtaagactcttaataatggctgtttattaca |
118 |
Q |
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| T |
41824867 |
gaaacctctgttggtgacccaaaaagaaaaggatcaccatggcatagaatgaaatggacagatacaatggtaagactcttaataatggctgtttattaca |
41824966 |
T |
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| Q |
119 |
ttggtgatgaagctggtacttcagaattaagtgctgataaaaagaaagctaatggtttattacaaaagaaagggaaatggaaatcagtttccaaaggaat |
218 |
Q |
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| T |
41824967 |
ttggtgatgaagctggtacttcagaattaagtgctgataaaaagaaagctaatggtttattacaaaagaaagggaaatggaaatcagtttccaaaggaat |
41825066 |
T |
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| Q |
219 |
gatggaaaaggggtactatgtttcacctcaacaatgtgaagacaagttcaatgatttgaacaaaaggtataaaagagttaatgatattctt |
309 |
Q |
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| T |
41825067 |
gatggaaaaagggtactatgtttcacctcaacaatgtgaagacaagttcaatgatttgaacaaaaggtataaaagagttaatgatattctt |
41825157 |
T |
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Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 26920418 - 26920131
Alignment:
| Q |
18 |
agaaacctctgttggtgacccaaaaagaaaaggatcaccatggcatagaatgaaatggacagatacaatggtaagactcttaataatggctgtttattac |
117 |
Q |
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| T |
26920418 |
agaaagctctggtggtgacccaaaaaggaagatttcaccatggcaaagaatgaaatggactgatacaatggtaaggctattgataatggctgtttattac |
26920319 |
T |
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| Q |
118 |
attggtgatgaagctggtacttca-gaattaagtgctgataaaaagaaagctaatggtttattacaaaagaaagggaaatggaaatcagtttccaaagga |
216 |
Q |
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| T |
26920318 |
attggtgatgaagctggttctgaagggactga-tccaaataagaaaaagtctagtggtttgttacagaagaagggaaagtggaaatctgtttcaagggct |
26920220 |
T |
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| Q |
217 |
atgatggaaaaggggtactatgtttcacctcaacaatgtgaagacaagttcaatgatttgaacaaaaggtataaaagagttaatgatat |
305 |
Q |
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| T |
26920219 |
atgatggaaaaagggttttatgtgtcacctcaacaatgtgaagataagtttaatgatttgaataaaaggtataagagagtgaatgatat |
26920131 |
T |
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