View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17737_high_35 (Length: 281)

Name: NF17737_high_35
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17737_high_35
NF17737_high_35
[»] chr8 (3 HSPs)
chr8 (1-267)||(13073762-13074031)
chr8 (20-62)||(5949911-5949953)
chr8 (12-177)||(41939780-41939955)
[»] chr4 (5 HSPs)
chr4 (12-181)||(21121871-21122040)
chr4 (12-181)||(53813569-53813740)
chr4 (15-71)||(25100607-25100663)
chr4 (79-177)||(45199336-45199435)
chr4 (29-62)||(35259921-35259954)
[»] chr1 (4 HSPs)
chr1 (12-181)||(8326653-8326826)
chr1 (12-131)||(18650151-18650270)
chr1 (12-71)||(26762486-26762545)
chr1 (109-181)||(6570774-6570847)
[»] chr6 (3 HSPs)
chr6 (15-128)||(32191491-32191606)
chr6 (12-76)||(30892130-30892194)
chr6 (20-59)||(592685-592724)
[»] chr2 (2 HSPs)
chr2 (20-181)||(8216428-8216591)
chr2 (29-181)||(464049-464202)
[»] chr5 (1 HSPs)
chr5 (36-178)||(12567140-12567284)
[»] chr3 (4 HSPs)
chr3 (27-181)||(23229212-23229369)
chr3 (12-62)||(51663729-51663779)
chr3 (29-173)||(28421454-28421601)
chr3 (29-61)||(23006158-23006190)
[»] chr7 (3 HSPs)
chr7 (20-60)||(28002982-28003022)
chr7 (12-62)||(31727454-31727504)
chr7 (30-91)||(20118009-20118070)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 13074031 - 13073762
Alignment:
Q  1 tgtaacatggtttcgctgcgttgcgtcagtgattagtgtatttttgttatgatagattagagctgtaccacctggatagatttttcacgatgtattccca 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| || ||||||||||     
T  13074031 tgtaacatggtttcgctgcgttgtgtcagtgattagtgtatttttgttatgatagattacagctgtaccacttggatagattttttacaatgtattcccg 13073932  T
Q  101 tctgagttttcctaggttaggtccaatgtcctcgatctttatacctgtttgtttttatttattata--ttttctctttggctt-nnnnnnnntagcatga 197  Q
    | ||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||  |||||||||||||||         ||||||||    
T  13073931 tttgagttttcctaggtcaggtccaatgtccccgatctttatacctatttgtttttatttattatattttttctctttggcttaaaaaaaaatagcatga 13073832  T
Q  198 aaatctatttaggaacatattccctccgtctcaaattacttatgcatgcaaatgtatttagaaacatact 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13073831 aaatctatttaggaacatattccctccgtctcaaattacttatgcatgcaaatgtatttagaaacatact 13073762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 5949953 - 5949911
Alignment:
Q  20 gttgcgtcagtgattagtgtatttttgttatgatagattagag 62  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  5949953 gttgcgtcagtgattagtgtatttttgttaggatagattagag 5949911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 177
Target Start/End: Complemental strand, 41939955 - 41939780
Alignment:
Q  12 ttcgctgcgttgcgtcagtgattagtgtatttttgttatgatagattagagctgtaccacctgga--------tagatttttcacgatgtattcccatct 103  Q
    ||||||| |||||| || ||| |||||||||||||||| |||||||||||| |||||||| || |        |   ||||| ||||||||||||| | |    
T  41939955 ttcgctgagttgcgccattgactagtgtatttttgttaggatagattagagttgtaccacttgaactgtttttttttttttttacgatgtattcccgttt 41939856  T
Q  104 gagttttcctaggttaggtccaatg---tcctcgatctttatacctgtttgtttttatttattatattttctctttg 177  Q
    |||||||||| | | || |||||||    ||||  ||||| |||||||||| |||||||||||||||||||||||||    
T  41939855 gagttttcctggatcagatccaatgctcccctcagtctttgtacctgtttg-ttttatttattatattttctctttg 41939780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 21121871 - 21122040
Alignment:
Q  12 ttcgctgcgttgcgtcagtgattagtgtatttttgttatgatagattagagctgtaccacctggatagatttttcacgatgtattcccatctgagttttc 111  Q
    ||||||| ||||||  |||||||||| |||||| |||| ||||||||||||||||||||| ||||||| ||||||||||||||||||| | |||||||||    
T  21121871 ttcgctgggttgcgctagtgattagtttatttt-gttaggatagattagagctgtaccacttggatagttttttcacgatgtattcccgtttgagttttc 21121969  T
Q  112 ctaggttaggtccaatg-tcctcgatctttatacctgtttgtttttatttattatattttctctttggctt 181  Q
    |||||| ||||||||||  || |  ||||| ||||||||||||||||||||||||||||||||||||||||    
T  21121970 ctaggtcaggtccaatgcccccccgtctttgtacctgtttgtttttatttattatattttctctttggctt 21122040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 53813740 - 53813569
Alignment:
Q  12 ttcgctgcgttgcgtcagtgattagtgtatttttgttatgatagattagagctgtaccacctggatagatttttcacgatgtattcccatctgagtt-tt 110  Q
    ||||||| |||||| ||||||||||| ||| ||||||| |||||||||||| |||||||| |||| |||||| ||||| ||||| ||| | |  ||| ||    
T  53813740 ttcgctgggttgcgccagtgattagtatatatttgttaggatagattagagttgtaccacttggacagatttatcacggtgtatccccgtttaggttatt 53813641  T
Q  111 cctaggttaggtccaatgt-cctcgatctttatacctgtttgtttttatttattatattttctctttggctt 181  Q
    ||| ||||||||||||||| || |  ||||| |   ||||||||||||||||||||||||||| ||||||||    
T  53813640 cctgggttaggtccaatgtccccctgtctttgtttttgtttgtttttatttattatattttctatttggctt 53813569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 25100607 - 25100663
Alignment:
Q  15 gctgcgttgcgtcagtgattagtgtatttttgttatgatagattagagctgtaccac 71  Q
    |||| |||||||| ||||||||| ||||||||||| ||||| |||||||||| ||||    
T  25100607 gctgggttgcgtctgtgattagtatatttttgttaggatagtttagagctgttccac 25100663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 45199435 - 45199336
Alignment:
Q  79 gatttttcacgatgtattcccatctgagttttcctaggttaggtccaatgtcctcga-tctttatacctgtttgtttttatttattatattttctctttg 177  Q
    ||||| ||||||||||||  ||| ||||||||||||||| |||||  |||||| | | ||||| || || ||| |||||||||||||| |||||| ||||    
T  45199435 gatttatcacgatgtattttcatttgagttttcctaggtcaggtcttatgtcccctagtctttgtatctttttctttttatttattattttttctttttg 45199336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 35259954 - 35259921
Alignment:
Q  29 gtgattagtgtatttttgttatgatagattagag 62  Q
    |||||||||| |||||||||||||||||||||||    
T  35259954 gtgattagtggatttttgttatgatagattagag 35259921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 8326826 - 8326653
Alignment:
Q  12 ttcgctgcgttgcgtcagtgattagtgtatttttgttatgatagattagagctgtaccacctggatagatttttcacgatgtattcccatctgagttttc 111  Q
    ||||||| ||||||||||| ||| |||| ||||||||| |||||  |||||  ||||||| |||| || ||||||||||||||||||| | || ||||||    
T  8326826 ttcgctgggttgcgtcagtcatttgtgtttttttgttaggatagtctagagtggtaccacttggacagttttttcacgatgtattcccgtttgggttttc 8326727  T
Q  112 ctaggttaggtccaatg-tcctcga---tctttatacctgtttgtttttatttattatattttctctttggctt 181  Q
    |||||| ||||||||||  || | |   ||| | ||||||||||||||||||||||||||||||||||||||||    
T  8326726 ctaggtcaggtccaatgccccgccaacttctgtgtacctgtttgtttttatttattatattttctctttggctt 8326653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 18650270 - 18650151
Alignment:
Q  12 ttcgctgcgttgcgtcagtgattagtgtatttttgttatgatagattagagctgtaccacctggatagatttttcacgatgtattcccatctgagttttc 111  Q
    ||||||| |||||||| |||||||||| |||||||||| ||||| ||||||  |  |||| ||||  |||||||||||||||||| || | |||||||||    
T  18650270 ttcgctgagttgcgtctgtgattagtggatttttgttaggataggttagagtggatccacttggactgatttttcacgatgtatttccgtttgagttttc 18650171  T
Q  112 ctaggttaggtccaatgtcc 131  Q
    |  ||| |||||| ||||||    
T  18650170 ccgggtcaggtcctatgtcc 18650151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 26762486 - 26762545
Alignment:
Q  12 ttcgctgcgttgcgtcagtgattagtgtatttttgttatgatagattagagctgtaccac 71  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||||||||| ||| ||||    
T  26762486 ttcgctgggttgcgccagtgattagtgtatttttgttaggatagattagagttgttccac 26762545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 6570847 - 6570774
Alignment:
Q  109 ttcctaggttaggtccaatgtcctcga-tctttatacctgtttgtttttatttattatattttctctttggctt 181  Q
    ||||| ||| ||||||||||||| | | ||||| || |||||||||||||||||||||||||||| ||||||||    
T  6570847 ttcctgggtcaggtccaatgtcccccagtctttgtatctgtttgtttttatttattatattttctatttggctt 6570774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 32191491 - 32191606
Alignment:
Q  15 gctgcgttgcgtcagtgattagtgtatttttgttatgatagattagagctgtaccacctggatagatttttcacgat-gtattcccatctgagtt-ttcc 112  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| |||||| ||||||| |||||||| | || ||| ||||    
T  32191491 gctgggttgcgtcagtgattagtgtatttttgttaggatagattagagttgtaccacttggacagatttatcacgatggtattcccgtttgggttattcc 32191590  T
Q  113 taggttaggtccaatg 128  Q
      ||||||||||||||    
T  32191591 cgggttaggtccaatg 32191606  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 30892194 - 30892130
Alignment:
Q  12 ttcgctgcgttgcgtcagtgattagtgtatttttgttatgatagattagagctgtaccacctgga 76  Q
    ||||||| |||||| ||||  ||||||||||||||||| |||||||||||| ||| |||| ||||    
T  30892194 ttcgctgggttgcgccagtagttagtgtatttttgttaggatagattagagttgttccacttgga 30892130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 592724 - 592685
Alignment:
Q  20 gttgcgtcagtgattagtgtatttttgttatgatagatta 59  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  592724 gttgcgtccgtgattagtggatttttgttatgatagatta 592685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 8216591 - 8216428
Alignment:
Q  20 gttgcgtcagtgattagtgtatttttgttatgatagattagagctgtaccacctggatagatttttcacgatgtattcccatctgagtt-ttcctaggtt 118  Q
    ||||||||||||| |||||||||||||||| |||||||||||| |||||||| | || |||||| |||| ||||||  || | || |||  || | |||     
T  8216591 gttgcgtcagtgactagtgtatttttgttaggatagattagagttgtaccactttgacagatttatcacaatgtatctccgtttgggttaatcttgggtc 8216492  T
Q  119 aggtccaatg-tcctcgatctttatacctgtttgtttttatttattatattttctctttggctt 181  Q
    ||| |||||| ||| | |||||| || |||||||||||||||||||||||||||| ||| ||||    
T  8216491 aggcccaatgctccccaatctttgtatctgtttgtttttatttattatattttctatttagctt 8216428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 181
Target Start/End: Original strand, 464049 - 464202
Alignment:
Q  29 gtgattagtgtatttttgttatgatagattagagctgtaccacctggatagatttttcacgatgtattcccatctgagttttcctaggttaggtccaatg 128  Q
    ||||||| | ||||||||||| |||||||||||  | |||||| || | || ||||| |||||||||| | || ||| |||| || | | || |||||||    
T  464049 gtgattactatatttttgttaggatagattagaattataccacttgaacagtttttttacgatgtatttctatttgaatttttctggatcagatccaatg 464148  T
Q  129 tcctc-gatctttatacctgtttgtttttatttattatattttctctttggctt 181  Q
    ||| | | ||||||||||||||||| |||||||| |||||||||||||||||||    
T  464149 tcccccggtctttatacctgtttgtgtttatttagtatattttctctttggctt 464202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 178
Target Start/End: Original strand, 12567140 - 12567284
Alignment:
Q  36 gtgtatttttgttatgatagattagagctgtaccacctggatagatttttcacgatgtattcccatctgagtt-ttcctaggttaggtccaatgtcctcg 134  Q
    |||||||||||||| |||||||||||| |||||||| |||| || ||| ||||| |||||| || | |  ||| ||||| | | |||||||||||||||     
T  12567140 gtgtatttttgttaggatagattagagttgtaccacttggacagttttatcacgttgtatttccgtttcggttattcctggatcaggtccaatgtcctcc 12567239  T
Q  135 a-tctttatacctgtttgtttttatttattatattttctctttgg 178  Q
    | |||||  | |||||||||||||||||||||||||||| |||||    
T  12567240 agtctttgaatctgtttgtttttatttattatattttctttttgg 12567284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 23229212 - 23229369
Alignment:
Q  27 cagtgattagtgtatttttgttatgatagattagagctgtaccacctggatagatttttcacgatgtattcccatctgagtt-ttcctaggttaggtcca 125  Q
    ||||||||||||||||||||||   ||||||||||| ||| ||| || || || ||| ||||||| ||||||| | || ||| |||||  ||||||| ||    
T  23229212 cagtgattagtgtatttttgtttgaatagattagagttgttcca-cttgacaggtttatcacgatatattcccgtttgggttattcctgtgttaggttca 23229310  T
Q  126 atgtcctc--gatctttatacctgttt-gtttttatttattatattttctctttggctt 181  Q
    |||||| |  ||||||| ||  |||||  ||||||||||||||||||||||||||||||    
T  23229311 atgtccccctgatctttgtatttgtttcttttttatttattatattttctctttggctt 23229369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 51663779 - 51663729
Alignment:
Q  12 ttcgctgcgttgcgtcagtgattagtgtatttttgttatgatagattagag 62  Q
    ||||||| |||||| ||||||||||||||||||| ||| ||||||||||||    
T  51663779 ttcgctgggttgcgccagtgattagtgtatttttattaggatagattagag 51663729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 173
Target Start/End: Original strand, 28421454 - 28421601
Alignment:
Q  29 gtgattagtgtatttttgttatgatagattagagctgtaccacctggatagatttttcacgatgtattcccatctgagtt-ttcctaggttaggtccaat 127  Q
    |||||||||| |||||||||||||||||||||||  |  |||| ||||  | ||| ||||| |||||| ||   |||||| ||||||||| ||||| |||    
T  28421454 gtgattagtgaatttttgttatgatagattagagtagatccacttggactgttttatcacgttgtatttccgcttgagttattcctaggtcaggtctaat 28421553  T
Q  128 g-tcctcga-tctttatacctgtttgtttttatttattatattttctc 173  Q
    | | ||| | ||||||||  | |||||||||||||| |||||||||||    
T  28421554 gtttctctagtctttatatatctttgtttttatttaatatattttctc 28421601  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 23006158 - 23006190
Alignment:
Q  29 gtgattagtgtatttttgttatgatagattaga 61  Q
    |||||||||| ||||||||||||||||||||||    
T  23006158 gtgattagtgaatttttgttatgatagattaga 23006190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 28002982 - 28003022
Alignment:
Q  20 gttgcgtcagtgattagtgtatttttgttatgatagattag 60  Q
    |||||||| |||||||||| |||||||||||||||||||||    
T  28002982 gttgcgtccgtgattagtggatttttgttatgatagattag 28003022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 31727504 - 31727454
Alignment:
Q  12 ttcgctgcgttgcgtcagtgattagtgtatttttgttatgatagattagag 62  Q
    ||||||| |||||||| |||||||||| | |||||||| ||||||||||||    
T  31727504 ttcgctgagttgcgtctgtgattagtgaacttttgttaggatagattagag 31727454  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 20118070 - 20118009
Alignment:
Q  30 tgattagtgtatttttgttatgatagattagagctgtaccacctggatagatttttcacgat 91  Q
    ||||||||| |||||||||| |||||||||||| ||  |||| ||||| ||||| |||||||    
T  20118070 tgattagtgaatttttgttaggatagattagagttgatccacttggattgatttatcacgat 20118009  T

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