View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_high_36 (Length: 278)
Name: NF17737_high_36
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 54790846 - 54791081
Alignment:
| Q |
15 |
atacttatgaactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcggatatcagtgagtctgagattgaggaatactc |
114 |
Q |
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| T |
54790846 |
atacttatgaactgacattcgtaactgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagtgagtctgagattgaggaatactc |
54790945 |
T |
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| Q |
115 |
tgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaagag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54790946 |
tgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaagag |
54791045 |
T |
|
| Q |
215 |
ttcaaatataaggatttgatgcaacatgcaaccgga |
250 |
Q |
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| T |
54791046 |
ttcaaatataaggatttgatgcaacatgcaaccgga |
54791081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 54778299 - 54778064
Alignment:
| Q |
15 |
atacttatgaactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcggatatcagtgagtctgagattgaggaatactc |
114 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54778299 |
atacttatgaactgacattcgtaactgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagtgagtctgagattgaggaatactc |
54778200 |
T |
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| Q |
115 |
tgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaagag |
214 |
Q |
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| T |
54778199 |
tgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaagag |
54778100 |
T |
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| Q |
215 |
ttcaaatataaggatttgatgcaacatgcaaccgga |
250 |
Q |
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| T |
54778099 |
ttcaaatataaggatttgatgcaacatgaaaccgga |
54778064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 52283504 - 52283735
Alignment:
| Q |
15 |
atacttatgaactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcggatatcagtgagtctgagattgaggaatactc |
114 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
52283504 |
atacttacgaactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcagatatcagcgagtctgagattgaggaatactc |
52283603 |
T |
|
| Q |
115 |
tgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaagag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52283604 |
tgacaaaccttataaggagttaaaggatggtaaatacaaagtgaagaatttaaacggtacactcaggtgtccatattgtgctggaaaaaagaagcaagag |
52283703 |
T |
|
| Q |
215 |
ttcaaatataaggatttgatgcaacatgcaac |
246 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
52283704 |
ttcaaatataaggatttgatgcaacatgcaac |
52283735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 24 - 244
Target Start/End: Original strand, 798789 - 799009
Alignment:
| Q |
24 |
aactgacatttgtaattgtatgcagagcttcaatggactacagctctgaagaagagtcggatatcagtgagtctgagattgaggaatactctgacaaacc |
123 |
Q |
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|||||||||||| ||| || |||||| |||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||| |
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| T |
798789 |
aactgacatttgaaatcttacgcagagtttcaatggactacagctctgaagaagagtcagagatcagtgagtctgagatcgaggaatactctgagaaacc |
798888 |
T |
|
| Q |
124 |
ttataaggagttaaaggatggtaaatacaaagtgaagaacttaaacggcacactcaggtgcccatattgtgctggaaaaaagaagcaagagttcaaatat |
223 |
Q |
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| T |
798889 |
atatgaagagttaagggccggtaaatacaaagtcaagaacaacaatgggactcttaggtgcccgtattgctctggaaagaaaaagcaagaattcaagtat |
798988 |
T |
|
| Q |
224 |
aaggatttgatgcaacatgca |
244 |
Q |
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|||||| || ||||||||||| |
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| T |
798989 |
aaggatctgttgcaacatgca |
799009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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