View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_high_37 (Length: 275)
Name: NF17737_high_37
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 32709966 - 32710206
Alignment:
| Q |
20 |
gtatgcactgcagtagagactagttatggcttcttctctaatggactttgtcaaagaaaacacttgttgctgtatataaaaccaattacatcaattacaa |
119 |
Q |
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| T |
32709966 |
gtatgcactgcagtagagactagttatggcttcttctctaatggactttgtcaaagaaagcacttgttgctgtatataaaaccaattacatcaattacaa |
32710065 |
T |
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| Q |
120 |
aacaatttacatgcacgtacatgatatgttaaatatgaattcatgtataaaatacctgaactaaggagttgtttgcatagcttgcttctccaacacctcc |
219 |
Q |
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| T |
32710066 |
aacaatttacatgcacgtacatgatatgttaaatatgaattcatgt-----atacctgaactaaggagttgtttgcatagcttgcttctccaacacctcc |
32710160 |
T |
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| Q |
220 |
attcatgtgcaatacttgtgatactttcattcttgcctttgcttct |
265 |
Q |
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| T |
32710161 |
attcatgtgcaatacttgtgatactttcattcttgcttttgtttct |
32710206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 32629044 - 32629110
Alignment:
| Q |
162 |
atgtataaaatacctgaactaaggagttgtttgcatagcttgcttctccaacacctccattcatgtg |
228 |
Q |
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| T |
32629044 |
atgtataaaatacctgaactaaggagttgtttgcatagctggtttctccaacgcctccattcatgtg |
32629110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 7298502 - 7298547
Alignment:
| Q |
185 |
gagttgtttgcatagcttgcttctccaacacctccattcatgtgca |
230 |
Q |
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| T |
7298502 |
gagttttttgcatagcttgtttctccatcacctccattcatgtgca |
7298547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 5812169 - 5812225
Alignment:
| Q |
170 |
aatacctgaactaaggagttgtttgcatagcttgcttctccaacacctccattcatg |
226 |
Q |
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| T |
5812169 |
aatacctgaagcaaggagttgtttgcatagcttgcttcttcaacacttccattcatg |
5812225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 27737613 - 27737676
Alignment:
| Q |
165 |
tataaaatacctgaactaaggagttgtttgcatagcttgcttctccaacacctccattcatgtg |
228 |
Q |
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| T |
27737613 |
tataatatacctgaagtaaggagttgtttgcatagcttgcttctgcaaggcttccattcatgtg |
27737676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 8028773 - 8028707
Alignment:
| Q |
172 |
tacctgaactaaggagttgtttgcatagcttgcttctccaacacctccattcatgtgcaatacttgt |
238 |
Q |
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| T |
8028773 |
tacctgaagtaaggagttatttgaatagcttgtttctccaattcctccattcatgtggagtacttgt |
8028707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 21945064 - 21945119
Alignment:
| Q |
173 |
acctgaactaaggagttgtttgcatagcttgcttctccaacacctccattcatgtg |
228 |
Q |
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||||||| | ||||||||||||||||||||||||| | || |||||||||||||| |
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| T |
21945064 |
acctgaagtgaggagttgtttgcatagcttgcttcatcgacgcctccattcatgtg |
21945119 |
T |
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