View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_high_42 (Length: 250)
Name: NF17737_high_42
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 13706474 - 13706717
Alignment:
| Q |
1 |
tcttgaaggttcattttgtcctgatataacttcaacatatatgagatgcgtcattctccataaaacaattcacaaacttcagcaaaaacatctcctcaga |
100 |
Q |
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| T |
13706474 |
tcttgaaggttcattttgtcctgatataacttcaacatat--gagatgcatcattctccataaaacaattcacaaacttcagcaaaaacatctcctcaga |
13706571 |
T |
|
| Q |
101 |
aataaaa---aatggtgtaatcaagctagaattcttgtctatcaaaccttttgctaacaaatgttgaacaacaaaacctcttgga--atgaccctctttt |
195 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| ||| |
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| T |
13706572 |
aataaaaaaaaatggtgtaatcaagctagcattcttgtctatcaaaccttttgctaacaaatattgaacaacaaaacctcttggaatataaccctccttt |
13706671 |
T |
|
| Q |
196 |
tcaaactaagtccaaaaatatttgcccctttgacaagttcctttgc |
241 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
13706672 |
ctaaactaagtccaaaaatatttgtccctttgacaagttcctttgc |
13706717 |
T |
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