View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17737_high_50 (Length: 237)
Name: NF17737_high_50
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_high_50 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 1625112 - 1625321
Alignment:
| Q |
12 |
tgagatgaaaatttgtgttttcaactagcttcaaacaatcaccatgaacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttc |
111 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1625112 |
tgagatgaaaaattgtgttttcaactagcttcaaacaatcaccatgaaccgttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttc |
1625211 |
T |
|
| Q |
112 |
tttttgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1625212 |
tttttgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtg |
1625311 |
T |
|
| Q |
212 |
tagtgtttgc |
221 |
Q |
| |
|
|||||||||| |
|
|
| T |
1625312 |
tagtgtttgc |
1625321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 1608105 - 1608314
Alignment:
| Q |
12 |
tgagatgaaaatttgtgttttcaactagcttcaaacaatcaccatgaacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttc |
111 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1608105 |
tgagatgaaaaattgtgttttcaaatagcttcaaacaatcaccatgaaccgttttatgcacaaatgagttttgttgttgttgagaattttcttgtgcttc |
1608204 |
T |
|
| Q |
112 |
tttttgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1608205 |
tttttgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtg |
1608304 |
T |
|
| Q |
212 |
tagtgtttgc |
221 |
Q |
| |
|
|||||||||| |
|
|
| T |
1608305 |
tagtgtttgc |
1608314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 1631595 - 1631804
Alignment:
| Q |
12 |
tgagatgaaaatttgtgttttcaactagcttcaaacaatcaccatgaacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttc |
111 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1631595 |
tgagatgaaaaattgtgttttcaaatagcttcaaacaatcaccatgaaccgttttatgcaccaatgagttttgttgttgttgagaatttgcttgtgcttc |
1631694 |
T |
|
| Q |
112 |
tttttgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1631695 |
tttttgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtg |
1631794 |
T |
|
| Q |
212 |
tagtgtttgc |
221 |
Q |
| |
|
|||||||||| |
|
|
| T |
1631795 |
tagtgtttgc |
1631804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 10818947 - 10818741
Alignment:
| Q |
12 |
tgagatgaaaatttgtgttttcaactagcttcaaacaatcaccatgaacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttc |
111 |
Q |
| |
|
||||||||||| |||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| || |||||||| |
|
|
| T |
10818947 |
tgagatgaaaaattgtattttcatatagcttcaaacaatcaccatgaaccgttttatgcaccgatgagttttgttgttg---agaattttcatgtgcttc |
10818851 |
T |
|
| Q |
112 |
tttttgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtg |
211 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10818850 |
tttttgcatggtaagagcttggtttaaggctaattgaacaagcatttccctgaattcaattctatgtttgattttgaaatgattgttcatttgtgttgtg |
10818751 |
T |
|
| Q |
212 |
tagtgtttgc |
221 |
Q |
| |
|
|||||||||| |
|
|
| T |
10818750 |
tagtgtttgc |
10818741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 18786053 - 18786262
Alignment:
| Q |
12 |
tgagatgaaaatttgtgttttcaactagcttcaaacaatcaccatgaacctttttatgcaccgatgagttttgttgttgttgagaattgtcttgtgcttc |
111 |
Q |
| |
|
||||||||||| |||||||||||| |||||| ||||||||| |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18786053 |
tgagatgaaaaattgtgttttcaaatagcttgaaacaatcagcatgaaccgttttatgcacggatgagttttgttgttgttgagaattatcttgtgcttc |
18786152 |
T |
|
| Q |
112 |
tttttgcatggtaagagcttgttttaaggctaattgaacaagcatttccctgaattcaactctatgtttgattttgaaatgattgttcatttgtgttgtg |
211 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18786153 |
tttttgcatggtaagagcttggtttaaggctaatttaacaagcatttccctgaattcaactctatgtttgattttgaagtgattgttcatttgtgttgtg |
18786252 |
T |
|
| Q |
212 |
tagtgtttgc |
221 |
Q |
| |
|
|||||||||| |
|
|
| T |
18786253 |
tagtgtttgc |
18786262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University