View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_high_52 (Length: 236)
Name: NF17737_high_52
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 34786505 - 34786307
Alignment:
| Q |
20 |
aaattgaggtcaactatcaagacctgaatcagaaaaatgtatgtgcaagttaattttagacactgaatttttggtagagtcttgttgacttgaatgagtt |
119 |
Q |
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| T |
34786505 |
aaattgaggtcaactatcaagacctgaatcagaaaaatgt----gcaagttagttttagacactgaatttttggtagagtcttgttgacttgaatgagtt |
34786410 |
T |
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| Q |
120 |
tttaacaagttatatccaatatctaatattaattaactctagtttctttaacttttaaaagtcctgaaaaatggaaagaaaagaaacacatccaaagtat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34786409 |
tttaacaagttatatccaatatctaatattaattaactctagtttctttaacttttaaaagtcctgaaaaatggaaagaaaagaaacacatccaaagtat |
34786310 |
T |
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