View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17737_high_53 (Length: 230)

Name: NF17737_high_53
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17737_high_53
NF17737_high_53
[»] chr6 (4 HSPs)
chr6 (60-199)||(10374930-10375069)
chr6 (97-148)||(34208771-34208823)
chr6 (107-168)||(1103526-1103587)
chr6 (100-204)||(2943898-2944001)
[»] chr7 (4 HSPs)
chr7 (87-178)||(11918525-11918616)
chr7 (107-168)||(6629549-6629610)
chr7 (107-176)||(12484154-12484222)
chr7 (107-176)||(12505584-12505652)
[»] chr2 (7 HSPs)
chr2 (118-178)||(17842062-17842122)
chr2 (87-202)||(18593423-18593538)
chr2 (107-168)||(8941186-8941247)
chr2 (107-178)||(31067695-31067766)
chr2 (87-148)||(21713548-21713609)
chr2 (87-168)||(15324910-15324992)
chr2 (26-61)||(44017739-44017774)
[»] chr8 (2 HSPs)
chr8 (97-165)||(38802462-38802530)
chr8 (27-61)||(44021008-44021042)
[»] chr3 (2 HSPs)
chr3 (114-180)||(27646977-27647043)
chr3 (87-167)||(12032455-12032534)
[»] chr1 (2 HSPs)
chr1 (108-168)||(4650422-4650482)
chr1 (131-176)||(25123202-25123247)
[»] scaffold0070 (1 HSPs)
scaffold0070 (107-168)||(3543-3604)
[»] chr4 (2 HSPs)
chr4 (26-61)||(18882351-18882386)
chr4 (92-172)||(39668621-39668701)


Alignment Details
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 199
Target Start/End: Original strand, 10374930 - 10375069
Alignment:
Q  60 taccatgtgccatttaccttttgcatgttactttaagttgtttatttttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtctt 159  Q
    |||| |||| ||||||| || ||||  ||||||||||||||| ||| ||||||||||||| || || |||| ||||| ||||||||||||||| ||||||    
T  10374930 taccttgtgtcatttactttctgcaatttactttaagttgttaattgttatttgtgttgttacgatatcttaacattacattcgacattcctaatgtctt 10375029  T
Q  160 gacatcgtgtacgacatctgttttttacgtgtccgaattt 199  Q
    |||||||| ||| |||||| |||| |||||| | ||||||    
T  10375030 gacatcgtttacaacatctattttctacgtgccagaattt 10375069  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 34208823 - 34208771
Alignment:
Q  97 ttgtttatttttatttgtgttgtcacaatgtc-ttgacattgcattcgacatt 148  Q
    ||||||||| ||||||||||||| || ||||| ||||||||||||||||||||    
T  34208823 ttgtttattgttatttgtgttgttacgatgtctttgacattgcattcgacatt 34208771  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 1103526 - 1103587
Alignment:
Q  107 ttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtg 168  Q
    |||||||||||||||| ||||||||||||||   ||||||||    ||||||||||||||||    
T  1103526 ttatttgtgttgtcacgatgtcttgacattgtgctcgacattgtgcgtgtcttgacatcgtg 1103587  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 2944001 - 2943898
Alignment:
Q  100 tttatttttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtgtacgacatctgttttttacgtgtccgaattt 199  Q
    |||||| ||| ||||||| | ||  |||| ||||| |||||||||||||| | ||||| ||||||||| ||||| || ||| |  |||||||| ||||||    
T  2944001 tttattgttaattgtgtttttacgttgtcctgacactgcattcgacattctt-gtgtcgtgacatcgtatacgatatttgtctcctacgtgtcagaattt 2943903  T
Q  200 caaat 204  Q
    |||||    
T  2943902 caaat 2943898  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 178
Target Start/End: Original strand, 11918525 - 11918616
Alignment:
Q  87 ttactttaagttgtttatttttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtgtacgacatct 178  Q
    ||||||||||||||||||  ||||||||||||| || |||| |||||||||||||||||||| || ||||| ||||||||  ||||||||||    
T  11918525 ttactttaagttgtttatggttatttgtgttgttacgatgttttgacattgcattcgacattactggtgtcctgacatcggatacgacatct 11918616  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 6629549 - 6629610
Alignment:
Q  107 ttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtg 168  Q
    |||||||||||||||| |||| ||||||||| | | ||||||||  ||||||||||||||||    
T  6629549 ttatttgtgttgtcacgatgttttgacattgtacttgacattccgcgtgtcttgacatcgtg 6629610  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 12484222 - 12484154
Alignment:
Q  107 ttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtgtacgacat 176  Q
    ||||||||||||| ||| ||||| ||||| ||||| |||||| ||  |||||||||||||| ||||||||    
T  12484222 ttatttgtgttgttaca-tgtctggacatagcatttgacatttctgatgtcttgacatcgtatacgacat 12484154  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 12505652 - 12505584
Alignment:
Q  107 ttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtgtacgacat 176  Q
    ||||||||||||| ||| ||||| ||||| ||||| |||||| ||  |||||||||||||| ||||||||    
T  12505652 ttatttgtgttgttaca-tgtctagacatagcatttgacatttctgatgtcttgacatcgtatacgacat 12505584  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 17842062 - 17842122
Alignment:
Q  118 gtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtgtacgacatct 178  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||    
T  17842062 gtcacaatgtcttgacattgcattcgacattcctggtgtcttgacatcgtgctcgacatct 17842122  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 18593538 - 18593423
Alignment:
Q  87 ttactttaagttgtttatttttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtgtacgacatctgtttttta 186  Q
    |||||| || ||||||||| ||||||||||| | || ||||||||||||||||||||||||| || || || ||||||||| |||||||| |||  | ||    
T  18593538 ttacttaaatttgtttattgttatttgtgttattacgatgtcttgacattgcattcgacattactggtatcctgacatcgtatacgacatatgtcctcta 18593439  T
Q  187 cgtgtccgaatttcaa 202  Q
    |||| | |||||||||    
T  18593438 cgtgccagaatttcaa 18593423  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 8941247 - 8941186
Alignment:
Q  107 ttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtg 168  Q
    |||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  8941247 ttatttgtattgtcacaatgtcttgacattgtactcgacattcctcgtgtcttgacatcgtg 8941186  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 31067695 - 31067766
Alignment:
Q  107 ttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtgtacgacatct 178  Q
    |||||| ||||||||| |||| ||||||||| |||||| |||||||||||||||||||||||| | ||||||    
T  31067695 ttatttatgttgtcacgatgttttgacattgtattcgatattcctagtgtcttgacatcgtgttcaacatct 31067766  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 21713548 - 21713609
Alignment:
Q  87 ttactttaagttgtttatttttatttgtgttgtcacaatgtcttgacattgcattcgacatt 148  Q
    ||||||||||||||||||| ||||||||||| | |  |||||||||||||| ||||||||||    
T  21713548 ttactttaagttgtttattgttatttgtgttattatgatgtcttgacattgtattcgacatt 21713609  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 15324992 - 15324910
Alignment:
Q  87 ttactttaagttgtttattt-ttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtg 168  Q
    ||||||||||||   ||||| ||| ||||||||||||  |||||| |||||||||| |||||| || ||||||||||||||||    
T  15324992 ttactttaagtttggtatttgttaattgtgttgtcacggtgtcttaacattgcatttgacatttctggtgtcttgacatcgtg 15324910  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 44017774 - 44017739
Alignment:
Q  26 ctcaaaaatgtcttataattagggacggagatagta 61  Q
    |||||||||||||||||||||||||| |||||||||    
T  44017774 ctcaaaaatgtcttataattagggacagagatagta 44017739  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 38802462 - 38802530
Alignment:
Q  97 ttgtttatttttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatc 165  Q
    ||||| ||| |||||||||||||||  ||||||||||||| ||||||||||||| ||||||||||||||    
T  38802462 ttgttaattgttatttgtgttgtcaagatgtcttgacattacattcgacattcccagtgtcttgacatc 38802530  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 44021042 - 44021008
Alignment:
Q  27 tcaaaaatgtcttataattagggacggagatagta 61  Q
    ||||||||||||||||||||||||||||| |||||    
T  44021042 tcaaaaatgtcttataattagggacggaggtagta 44021008  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 27646977 - 27647043
Alignment:
Q  114 tgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtgtacgacatctgt 180  Q
    |||||| ||| ||||||||||||||||||||||||| |  | |||||||||||| ||||||||||||    
T  27646977 tgttgttacattgtcttgacattgcattcgacattcttgatatcttgacatcgtatacgacatctgt 27647043  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 12032455 - 12032534
Alignment:
Q  87 ttactttaagttgtttatttttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgt 167  Q
    ||||||||||||||||||| |||||||| |||| ||  |||| |||||||| ||||| ||||||| ||||| |||||||||    
T  12032455 ttactttaagttgtttattgttatttgtattgttacgttgtcctgacattggattcgtcattcct-gtgtcctgacatcgt 12032534  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 4650422 - 4650482
Alignment:
Q  108 tatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtg 168  Q
    ||||||||||||||| |||||||||||||| | |||||||| |  ||||||||||||||||    
T  4650422 tatttgtgttgtcacgatgtcttgacattgtactcgacatttcgcgtgtcttgacatcgtg 4650482  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 25123247 - 25123202
Alignment:
Q  131 gacattgcattcgacattcctagtgtcttgacatcgtgtacgacat 176  Q
    ||||||||||||||||||||| ||||| |||||||||  |||||||    
T  25123247 gacattgcattcgacattccttgtgtcatgacatcgtacacgacat 25123202  T

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Target: scaffold0070 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 3604 - 3543
Alignment:
Q  107 ttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtg 168  Q
    |||||||||||||||| ||||||||||||||   | ||||||||  ||||||||||||||||    
T  3604 ttatttgtgttgtcacgatgtcttgacattgtgctggacattccgcgtgtcttgacatcgtg 3543  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 18882386 - 18882351
Alignment:
Q  26 ctcaaaaatgtcttataattagggacggagatagta 61  Q
    |||||||| |||||||||||||||||||||||||||    
T  18882386 ctcaaaaaggtcttataattagggacggagatagta 18882351  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 39668621 - 39668701
Alignment:
Q  92 ttaagttgtttatttttatttgtgttgtcacaatgtcttgacattgcattcgacattcctagtgtcttgacatcgtgtacg 172  Q
    ||||||| |||||| ||||||||||||| || |||| | |  |||||||||||||||  |  |||||||||||||| ||||    
T  39668621 ttaagttatttattgttatttgtgttgttacgatgtatggttattgcattcgacatttttgatgtcttgacatcgtatacg 39668701  T

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