View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_high_55 (Length: 227)
Name: NF17737_high_55
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_high_55 |
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| [»] scaffold0126 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: scaffold0126 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 23046 - 23272
Alignment:
| Q |
1 |
cattataagttgttgggagaatatgaattatattagtcaaagaataagaaacatacctgtctcacaaaactttcaagagtggagagcttgttcatggcaa |
100 |
Q |
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| T |
23046 |
cattataagttgttgggagaatatgaattatattagtcaaagaataagaaacatacctgtctcacaaaactttcaagagtggagagcttgttcatggcaa |
23145 |
T |
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| Q |
101 |
gagccatttgtcccatgtaattagccatattaggaggattgcttaaagaatctgatgttatagtctctgaaagagattggttgagtgcatcaagcccttg |
200 |
Q |
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| T |
23146 |
gagccatttgtcccatatagttagccatattaggaggattgcttaaagaatctgatgttatagtctctgaaagagattggttgagtgcatcaagcccttg |
23245 |
T |
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| Q |
201 |
ggaaagtgcttcttctgcctcttgtgt |
227 |
Q |
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| T |
23246 |
ggaaagtgcttcttctgcctcttgtgt |
23272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 24976897 - 24976773
Alignment:
| Q |
1 |
cattataagttgttgggagaatatgaattatattagtcaaagaataagaaacatacctgtctcacaaaactttcaagagtggagagcttgttcatggcaa |
100 |
Q |
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| T |
24976897 |
cattataagttgttgggagaatatgaattatattagtcaaagaataagaaacatacctgtctcacaa-------aagagtggagagtttgttgatggcaa |
24976805 |
T |
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| Q |
101 |
gagccatttgtcccatgtaattagccatatta |
132 |
Q |
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| T |
24976804 |
gagccatttgttccatgtagttagccatatta |
24976773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 54 - 227
Target Start/End: Original strand, 36796901 - 36797074
Alignment:
| Q |
54 |
tacctgtctcacaaaactttcaagagtggagagcttgttcatggcaagagccatttgtcccatgtaattagccatattaggaggattgcttaaagaatct |
153 |
Q |
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| T |
36796901 |
tacctctctgacgaaactttcaagagtggagagtttgttcatggcccttgccatttggtccatgtagttggtcatattgggaggatagctcaatgaatct |
36797000 |
T |
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| Q |
154 |
gatgttatagtctctgaaagagattggttgagtgcatcaagcccttgggaaagtgcttcttctgcctcttgtgt |
227 |
Q |
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| T |
36797001 |
gatgttatagtttcagaaagagtttgattgagtgcctcaagtccttgagagagagcatcttctccctgttgtgt |
36797074 |
T |
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