View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_high_64 (Length: 206)
Name: NF17737_high_64
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_high_64 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 1047226 - 1047054
Alignment:
| Q |
19 |
agactaagcgtttggttcaaataagttattgaaacattactcttgtttacaagactatatgtgtaataaacttcatttgaattgttcacggatcttgcaa |
118 |
Q |
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| T |
1047226 |
agactaagcgtttggttcaaataagttattgaaacattactcttgtttacaagactatatgagtaataaacctcatttgaattgttcacagatcttgcaa |
1047127 |
T |
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| Q |
119 |
ctacaacagttgatgtaacaatctccataggcgctccactaaatccaactccgttccaaggaccactcctatg |
191 |
Q |
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| T |
1047126 |
caacaacagttgatgtaacaatctccataggcgctccactaaatccaactccattccaaggaccactcctatg |
1047054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 1072039 - 1071870
Alignment:
| Q |
19 |
agactaagcgtttggttcaaataagttattgaaacattactcttgtttacaagactatatgtgtaataaacttcatttgaattgttcacggatcttgcaa |
118 |
Q |
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| T |
1072039 |
agactaagcgtttggttcaaataagttattgaaaccatactcttgtttacaagactatatgtgaaataaacttcatttgaattgatcacaggtgttgtag |
1071940 |
T |
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| Q |
119 |
ctacaacagttgatgtaacaatctccataggcgctccactaaatccaactccgttccaaggaccactcct |
188 |
Q |
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| T |
1071939 |
ctataacacttgacgtaataatctccataggtgctccactaaatccaactccattccaaggaccactcct |
1071870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 28 - 179
Target Start/End: Complemental strand, 1087691 - 1087540
Alignment:
| Q |
28 |
gtttggttcaaataagttattgaaacattactcttgtttacaagactatatgtgtaataaacttcatttgaattgttcacggatcttgcaactacaacag |
127 |
Q |
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| T |
1087691 |
gtttggttcaaataagttattgaaacattactcttgtttacaagactatatatgtaataaacttcatttgaattgttcaccgacgttgtaattacaacaa |
1087592 |
T |
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| Q |
128 |
ttgatgtaacaatctccataggcgctccactaaatccaactccgttccaagg |
179 |
Q |
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| T |
1087591 |
ttgaagtaacaatctccacaggtgctccactaaatccaactccattccaagg |
1087540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 28 - 191
Target Start/End: Complemental strand, 1104244 - 1104084
Alignment:
| Q |
28 |
gtttggttcaaataagttattgaaacattactcttgtttacaagactatatgtgtaataaacttcatttgaattgttcacggatcttgcaactacaacag |
127 |
Q |
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| T |
1104244 |
gtttggttcaaataagttattgaaacattactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaattttgtttcgaca--at |
1104147 |
T |
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| Q |
128 |
ttgatgtaacaatctccataggcgctccactaaatccaactccgttccaaggaccactcctatg |
191 |
Q |
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|||| |||||| || || || |||||||||||||||||||| |||||||||||||||||||| |
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| T |
1104146 |
ttga-gtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatg |
1104084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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