View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_high_7 (Length: 493)
Name: NF17737_high_7
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_high_7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 199 - 493
Target Start/End: Original strand, 12078794 - 12079071
Alignment:
| Q |
199 |
cccggggattacaaggagttgattaagactcaccgccgaaagcctctcccatgcactgcaatcccatgcatacaccaaacacaggtatagttggtccaag |
298 |
Q |
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| T |
12078794 |
cccgggaattacaaggagttgattaagactcaccgccgaaagcctctcccatgcactgcaatcccatgcatacaccaaacacaggtatagttggtccaag |
12078893 |
T |
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| Q |
299 |
ttcgaaaactgtttgcacagatatgcctgaatcttgaggtgttcctgtaaggagcaaacaatgttacattagaagtcttgttacattaggacgaaacaac |
398 |
Q |
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| T |
12078894 |
ttcgaaaactgtttgcaaagatatgcctgaatcttgaggtgttcctgtaaggagaaaacaa-----------------tgttacattaggacgaaacaac |
12078976 |
T |
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| Q |
399 |
gtgtatagttcattgatcgtgtttaagaattttcactattttattcgtctcaaattaagaaataatcgaaacttctgaagaaggcgatctttacc |
493 |
Q |
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| T |
12078977 |
gtgtatagttcattgatcgtgtttaagaattttcactattttattcgtctaaaattaagaaataatcgaaaattctgaagaaggcgatctttacc |
12079071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 12078602 - 12078729
Alignment:
| Q |
7 |
tgagatgaaatggtaaaagttaaaatgtaggagacgctttccattgaaaaagaaagctgaattaatgatgaacgacacacaaatatgtcaagaaatttta |
106 |
Q |
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|||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12078602 |
tgagatgaaacggtaaaagttaaaatgtaggagacactttacattgaaaaagaaagctgaattaatgatgaacgacacacaaatatgtcaagaaatttta |
12078701 |
T |
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| Q |
107 |
cattgaattatgggtctgttcgttacag |
134 |
Q |
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| T |
12078702 |
cattgaattatggatctgttcgttacag |
12078729 |
T |
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