View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17737_low_12 (Length: 454)

Name: NF17737_low_12
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17737_low_12
NF17737_low_12
[»] chr2 (16 HSPs)
chr2 (10-348)||(28215611-28215949)
chr2 (121-345)||(32565382-32565609)
chr2 (121-345)||(32806567-32806794)
chr2 (121-345)||(32815004-32815231)
chr2 (121-345)||(32309226-32309453)
chr2 (182-348)||(28220447-28220610)
chr2 (121-318)||(32799640-32799840)
chr2 (71-203)||(28220224-28220356)
chr2 (10-107)||(32309070-32309167)
chr2 (10-107)||(32799899-32799996)
chr2 (15-107)||(32565668-32565760)
chr2 (15-107)||(32806853-32806945)
chr2 (15-107)||(32815290-32815382)
chr2 (304-345)||(32305344-32305385)
chr2 (10-50)||(28220187-28220227)
chr2 (23-52)||(28216011-28216040)
[»] chr6 (2 HSPs)
chr6 (106-342)||(301362-301596)
chr6 (15-107)||(301229-301321)


Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 10 - 348
Target Start/End: Complemental strand, 28215949 - 28215611
Alignment:
Q  10 catcatcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaaca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215949 catcatcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaaca 28215850  T
Q  110 acttcatttaatttctatcatacttcttttcgttcagtcaagttagctggtatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttc 209  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215849 acttcatttaatttctatcatacttcttttcgttcagtgaagttagctggtatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttc 28215750  T
Q  210 gatataatttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcaccttctct 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28215749 gatataatttctataaggattcttgccctgaagctgagaatattgttcgttccgctgttaccgatatttactctgatcatagagaccttgcaccttctct 28215650  T
Q  310 tcttcgtctcttctttcatgattgcttcatccaggttcc 348  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28215649 tcttcgtctcttctttcatgattgcttcatccaggttcc 28215611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 121 - 345
Target Start/End: Complemental strand, 32565609 - 32565382
Alignment:
Q  121 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 217  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32565609 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32565510  T
Q  218 ttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcaccttctcttcttcgtc 317  Q
    ||||||| ||||||||||||| |||||||  |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  32565509 ttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtc 32565410  T
Q  318 tcttctttcatgattgcttcatccaggt 345  Q
    ||||||||||||||||||||||||||||    
T  32565409 tcttctttcatgattgcttcatccaggt 32565382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 121 - 345
Target Start/End: Complemental strand, 32806794 - 32806567
Alignment:
Q  121 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 217  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32806794 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32806695  T
Q  218 ttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcaccttctcttcttcgtc 317  Q
    ||||||| ||||||||||||| |||||||  |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  32806694 ttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtc 32806595  T
Q  318 tcttctttcatgattgcttcatccaggt 345  Q
    ||||||||||||||||||||||||||||    
T  32806594 tcttctttcatgattgcttcatccaggt 32806567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 121 - 345
Target Start/End: Complemental strand, 32815231 - 32815004
Alignment:
Q  121 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 217  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32815231 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32815132  T
Q  218 ttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcaccttctcttcttcgtc 317  Q
    ||||||| ||||||||||||| |||||||  |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  32815131 ttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtc 32815032  T
Q  318 tcttctttcatgattgcttcatccaggt 345  Q
    | ||||||||||||||||||||||||||    
T  32815031 ttttctttcatgattgcttcatccaggt 32815004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 121 - 345
Target Start/End: Original strand, 32309226 - 32309453
Alignment:
Q  121 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 217  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32309226 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32309325  T
Q  218 ttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcaccttctcttcttcgtc 317  Q
    ||||||| ||||||||||||| |||||||  ||| |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  32309326 ttctatagggattcttgccctcaagctgaagataatgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtc 32309425  T
Q  318 tcttctttcatgattgcttcatccaggt 345  Q
    | ||||||||||||||||||||||||||    
T  32309426 ttttctttcatgattgcttcatccaggt 32309453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 182 - 348
Target Start/End: Original strand, 28220447 - 28220610
Alignment:
Q  182 gaaagtatcagagatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttact 281  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  28220447 gaaagaatcagagatggttccaatcttcaatataatttctataaggtttcttgccctcaagctgagaatattgttcgttccgctgttaccgatatttact 28220546  T
Q  282 ctgatcatagagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccaggttcc 348  Q
     | |||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  28220547 ttaatcatagagacc-tgcaccttctcttcttcgtctct--tttcatgattgcttcatccaggttcc 28220610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 121 - 318
Target Start/End: Complemental strand, 32799840 - 32799640
Alignment:
Q  121 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 217  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32799840 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32799741  T
Q  218 ttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcaccttctcttcttcgtc 317  Q
    ||||||| ||||||||||||| |||||||  |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  32799740 ttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtc 32799641  T
Q  318 t 318  Q
    |    
T  32799640 t 32799640  T

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Target: chr2; HSP #8
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 71 - 203
Target Start/End: Original strand, 28220224 - 28220356
Alignment:
Q  71 ttcattgcagtccttcctgttcttctctctctcagaacaacttcatttaatttctatcatacttcttttcgttcagtcaagttagctggtatttttccgt 170  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28220224 ttcattgcagtcctttctgttcttctctctctcagaacaacttcatttaatttctatcatacttcttttcgttcagtgaagttagctggtatttttccgt 28220323  T
Q  171 ttgatttcagtgaaagtatcagagatggttcca 203  Q
    ||||||||| | |||| ||||||||||||||||    
T  28220324 ttgatttcaatcaaagaatcagagatggttcca 28220356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 32309070 - 32309167
Alignment:
Q  10 catcatcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 107  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||| ||||||||||||    
T  32309070 catcttcatcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctctcagaa 32309167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 32799996 - 32799899
Alignment:
Q  10 catcatcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 107  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| | |||||||||||||||||||||||||||    
T  32799996 catcttcatcatcaagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtattccttcctgttcttctctctctcagaa 32799899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 32565760 - 32565668
Alignment:
Q  15 tcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 107  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||| ||||||||||||    
T  32565760 tcatcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctctcagaa 32565668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 32806945 - 32806853
Alignment:
Q  15 tcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 107  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||| |||||||||||    
T  32806945 tcatcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttccctctctcagaa 32806853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 32815382 - 32815290
Alignment:
Q  15 tcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 107  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||| ||||||||||||    
T  32815382 tcatcatcaagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctctcagaa 32815290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 345
Target Start/End: Original strand, 32305344 - 32305385
Alignment:
Q  304 ttctcttcttcgtctcttctttcatgattgcttcatccaggt 345  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32305344 ttctcttcttcgtctcttctttcatgattgcttcatccaggt 32305385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 28220187 - 28220227
Alignment:
Q  10 catcatcatcatcaagaaaatgaggagattcttcatcttca 50  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  28220187 catcattatcatcaagaaaatgaggagaatcttcatcttca 28220227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 52
Target Start/End: Complemental strand, 28216040 - 28216011
Alignment:
Q  23 aagaaaatgaggagattcttcatcttcaac 52  Q
    ||||||||||||||||||||||||||||||    
T  28216040 aagaaaatgaggagattcttcatcttcaac 28216011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 8e-65; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 106 - 342
Target Start/End: Original strand, 301362 - 301596
Alignment:
Q  106 aacaacttcatttaatttctatcatacttcttttcgttcagtcaagttagctggtatttttccgtttgatttcagtgaaagtatcagagatggttccaat 205  Q
    ||||||||||| |  ||||| ||||||  ||||| ||||||||| ||||||   || |||||| |||||||||| | |||| ||||||||||||||||||    
T  301362 aacaacttcatcttctttctctcatac--cttttggttcagtcacgttagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaat 301459  T
Q  206 cttcgatataatttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcacctt 305  Q
    |||| |||||||||||||| ||||||| ||||| |||||||  ||||||||| |||||| ||||||||||| |||  |||||||||||||||||||||||    
T  301460 cttcaatataatttctatagggattctagccctcaagctgaagatattgttccttccgctgttaccgatatctaccttgatcatagagaccttgcacctt 301559  T
Q  306 ctcttcttcgtctcttctttcatgattgcttcatcca 342  Q
    |||||||||||||||||||||||||||||||||||||    
T  301560 ctcttcttcgtctcttctttcatgattgcttcatcca 301596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 301229 - 301321
Alignment:
Q  15 tcatcatcaagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 107  Q
    ||||||||||||||||||| |||||||||||||||||| ||||| || ||||||||||||||| ||||||||| |||||||||||| ||||||    
T  301229 tcatcatcaagaaaatgagaagattcttcatcttcaacccatggttcatagttgcattcattgtagtccttcccgttcttctctctttcagaa 301321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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