View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_15 (Length: 439)
Name: NF17737_low_15
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Original strand, 14773998 - 14774412
Alignment:
| Q |
17 |
agatccaattcaaccatctatttcaacaattgtta----tacaagtccatttaataataagaatatcactaattaattttcacatgtaattaaacaaccc |
112 |
Q |
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| T |
14773998 |
agatccaattcaaccatctatttcaacaattgttagttatacaagtccatttaataataagaatataactaat----tttcacatgtaattaaacaaccc |
14774093 |
T |
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| Q |
113 |
aagttaccttgagtcctactcctaatcaaactagctaagagatcaacttcatacaaatgtattactttttcaatcaaacacattatgattattcatataa |
212 |
Q |
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| T |
14774094 |
aagttaccttgagtcctactcctaatcaaactagctaagagatcaacttcatacaaatgtattactttttcaatcaaacacatgatgattattcatataa |
14774193 |
T |
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| Q |
213 |
atcatctcagtagaagactcattctggttcttcattctacctttctcttccaacatcttaacatacataccataaacataagaacagaatccccacatgc |
312 |
Q |
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| T |
14774194 |
atcatctcagtagaagactcattctggttcttcattctacctttctcttccaacatcttaacatacataccataaacataagaacagaatccccacatgc |
14774293 |
T |
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| Q |
313 |
acaaaacagttgaaacagccttaacaccaccaaatgcatctctaaacaccaaaacacctcccaacacattcatagacaacaaagctgtcatacaaatccc |
412 |
Q |
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| T |
14774294 |
acaaaacagttgaaacagccttaacaccaccaaatgcatctctaaacaccaaaacacctcccaacacattcatagacaacaaagctgtcatacaaatccc |
14774393 |
T |
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| Q |
413 |
accagttaatgatgatgtc |
431 |
Q |
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| T |
14774394 |
accagttaatgaagatgtc |
14774412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 252 - 431
Target Start/End: Original strand, 14782110 - 14782289
Alignment:
| Q |
252 |
cctttctcttccaacatcttaacatacataccataaacataagaacagaatccccacatgcacaaaacagttgaaacagccttaacaccaccaaatgcat |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || | |||||||||||||| |
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| T |
14782110 |
cctttctcttccaacatcttaacatacataccataaacataagaacaaaatccccacatacacaaaacagttgaaacagctttcaaaccaccaaatgcat |
14782209 |
T |
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| Q |
352 |
ctctaaacaccaaaacacctcccaacacattcatagacaacaaagctgtcatacaaatcccaccagttaatgatgatgtc |
431 |
Q |
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| T |
14782210 |
ctctataaactataacaccacccaacacattcatagacaacaaagctgtcatgcaaatcccaccagttaatgaagatgtc |
14782289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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