View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17737_low_16 (Length: 436)

Name: NF17737_low_16
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17737_low_16
NF17737_low_16
[»] chr1 (15 HSPs)
chr1 (1-420)||(6592238-6592657)
chr1 (20-420)||(6601512-6601909)
chr1 (68-188)||(3361842-3361962)
chr1 (299-390)||(3340418-3340509)
chr1 (289-373)||(2010476-2010560)
chr1 (299-381)||(2948497-2948579)
chr1 (133-187)||(3340636-3340690)
chr1 (289-346)||(2019716-2019773)
chr1 (290-361)||(3218540-3218611)
chr1 (299-362)||(3349320-3349383)
chr1 (212-270)||(3349433-3349491)
chr1 (297-370)||(3372620-3372693)
chr1 (308-369)||(3378665-3378726)
chr1 (289-346)||(4335023-4335080)
chr1 (12-104)||(3218247-3218339)
[»] chr5 (1 HSPs)
chr5 (299-380)||(17969781-17969862)
[»] chr4 (1 HSPs)
chr4 (130-183)||(21237664-21237717)
[»] chr2 (2 HSPs)
chr2 (136-189)||(20923600-20923653)
chr2 (289-341)||(20923436-20923488)


Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 6592238 - 6592657
Alignment:
Q  1 ttcaagcagaaggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaaccttgaaat 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592238 ttcaagcataaggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaaccttgaaat 6592337  T
Q  101 gttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttggactgggtttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6592338 gttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttggtctgggtttt 6592437  T
Q  201 tccagatttctaacacaaactctttaacctgccatctggttagataaagagtccaccgatcaatatcagtgacatcaatgtgatcccgagagagcttgaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592438 tccagatttctaacacaaactctttaacctgccatctggttagataaagagtccaccgatcaatatcagtgacatcaatgtgatcccgagagagcttgaa 6592537  T
Q  301 ctttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagtttcggagagacat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592538 ctttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagtttcggagagacat 6592637  T
Q  401 tcattatcaaacacaagatt 420  Q
    ||||||||||||||||||||    
T  6592638 tcattatcaaacacaagatt 6592657  T

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Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 420
Target Start/End: Original strand, 6601512 - 6601909
Alignment:
Q  20 gatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaaccttgaaatgttgatggtggtataagcc 119  Q
    ||||| |||||||||| |||||||| || ||| ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  6601512 gatatcaagttttcaaaagcatcttgagacaaggtaacatgttgcagatcaagactcttcaagttcctgaatccttgaaatgttgatggtggtataagcc 6601611  T
Q  120 agcattctaataattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttggactgggtttttccagatttctaacacaaa 219  Q
    | || |  ||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||  |      |||||||||||| | ||||||    
T  6601612 aacagttaaataattctaaatgatgtaaaccttgacaagaaaataagcatgaaggtattttatagcgttgccc------tttccagatttccagcacaaa 6601705  T
Q  220 ctctttaacctgccatctggttagataaagagtccaccgatcaatatcagtgacatcaatgtgatcccga---gagagcttgaactttttgattggtcca 316  Q
    |||||||||  ||| ||||||||||| ||||||||| ||||||||||| || ||  ||||| | || |||   ||||||||||||||||||||||| |||    
T  6601706 ctctttaacaggccttctggttagatgaagagtccatcgatcaatatcggtcactccaatgagctcgcgatgggagagcttgaactttttgattggccca 6601805  T
Q  317 gaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagtttcggagagacattcattatcaaacacaa 416  Q
    ||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| ||||||| |||||   ||||||||||||    
T  6601806 gaatggagtaaaagtacatgatcaataattctcgaaagtttgctcttgataactaaaaggtcttcagaagtgtcggagatacattggctatcaaacacaa 6601905  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 188
Target Start/End: Complemental strand, 3361962 - 3361842
Alignment:
Q  68 tcaagactcttcaagttcttgaaaccttgaaatgttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataacc 167  Q
    |||||||| |||||||||||||| |||| ||| |||| ||| ||| ||||||| ||   |  ||||||||||||||| |||||||||||||| ||||| |    
T  3361962 tcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagc 3361863  T
Q  168 atgaaggtattttatagcgtt 188  Q
    |  |||| || ||||||||||    
T  3361862 accaagggatcttatagcgtt 3361842  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 390
Target Start/End: Complemental strand, 3340509 - 3340418
Alignment:
Q  299 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagtttc 390  Q
    ||||| |||||||| |||||| | ||||||||||||||||||| ||||||| ||| ||||||||  |||||| || ||| ||| ||||||||    
T  3340509 aacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctctcaataactgaagggtgtttggaagtttc 3340418  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 373
Target Start/End: Complemental strand, 2010560 - 2010476
Alignment:
Q  289 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaa 373  Q
    ||||||||||||||| |||||||| || |||   ||||||||||||||||||||||||    ||||||| |||| ||||||||||    
T  2010560 agagagcttgaacttgttgattggcccggaataaagtaaaagtacatgatcaataattgccaaaagctttctctcgataactaaa 2010476  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 381
Target Start/End: Original strand, 2948497 - 2948579
Alignment:
Q  299 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtcttt 381  Q
    ||||| |||||||| |||||| | ||||||||||||||||||| ||||||  ||| ||||||||  |||||| || |||||||    
T  2948497 aacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattctcaaaaacttgctctcaataactgaagggtcttt 2948579  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 3340690 - 3340636
Alignment:
Q  133 ttctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgt 187  Q
    ||||||||| ||||||||||||||||| ||||| ||  |||||||||||||||||    
T  3340690 ttctaaatgttgcaaactttgacaagagaataagcagcaaggtattttatagcgt 3340636  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 2019773 - 2019716
Alignment:
Q  289 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataatt 346  Q
    ||||||||||||||| |||||||| || |||   ||||||||||||||||||||||||    
T  2019773 agagagcttgaacttgttgattggcccggaataaagtaaaagtacatgatcaataatt 2019716  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 361
Target Start/End: Original strand, 3218540 - 3218611
Alignment:
Q  290 gagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctc 361  Q
    ||||||| |||||| ||||| ||||||||| | |||| |||||||||||||| ||||||  | |||||||||    
T  3218540 gagagctggaacttgttgatcggtccagaatgaagtagaagtacatgatcaacaattctcaacagcttgctc 3218611  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 3349383 - 3349320
Alignment:
Q  299 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctct 362  Q
    ||||| |||||| | |||||| | ||||||||||||||||||||||||||  ||| ||||||||    
T  3349383 aacttgttgattagcccagaatgaagtaaaagtacatgatcaataattctcaaaaacttgctct 3349320  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 3349491 - 3349433
Alignment:
Q  212 aacacaaactctttaacctgccatctggttagataaagagtccaccgatcaatatcagt 270  Q
    ||||||||||||||||  || | || |||||||| |||| |||||||||||||||||||    
T  3349491 aacacaaactctttaatatgtcttccggttagatgaagaatccaccgatcaatatcagt 3349433  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 370
Target Start/End: Complemental strand, 3372693 - 3372620
Alignment:
Q  297 tgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataact 370  Q
    ||||||| |||||||| |||||| |  |||||||||||||||||| ||||||  ||| |||| | |||||||||    
T  3372693 tgaacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttgttattgataact 3372620  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 3378726 - 3378665
Alignment:
Q  308 attggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataac 369  Q
    ||||| |||||| | ||||||||||||||||| ||||||||  ||| |||||||| ||||||    
T  3378726 attggcccagaatgaagtaaaagtacatgatcgataattctcaaaaacttgctctcgataac 3378665  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 4335023 - 4335080
Alignment:
Q  289 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataatt 346  Q
    ||||| ||||||| | ||||||||||||||| | | ||||||||||||||||| ||||    
T  4335023 agagaacttgaacatgttgattggtccagaatgaactaaaagtacatgatcaacaatt 4335080  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 3218247 - 3218339
Alignment:
Q  12 ggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaaccttgaaatgttg 104  Q
    |||||| |||||| |||||||||| |||||||| || || |||||| |  |  || |||||||| |||||||||||||| |||| ||| ||||    
T  3218247 ggcagccggatatcaagttttcaaaagcatcttgagccattgtaacctgatatagttcaagacttttcaagttcttgaagcctttaaacgttg 3218339  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 380
Target Start/End: Complemental strand, 17969862 - 17969781
Alignment:
Q  299 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctt 380  Q
    ||||| |||||||| || ||| | |||||||||||||||||||| |||||  ||| ||||| || ||||||| ||| |||||    
T  17969862 aacttgttgattggccctgaatgaagtaaaagtacatgatcaatgattctcaaaaacttgccctcgataactgaaaagtctt 17969781  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 21237717 - 21237664
Alignment:
Q  130 taattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttata 183  Q
    ||||||||||||||| |||||||||||||| ||||| ||  ||||||| |||||    
T  21237717 taattctaaatgatgtaaactttgacaagagaataagcaccaaggtatcttata 21237664  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 20923653 - 20923600
Alignment:
Q  136 taaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttg 189  Q
    ||||||||| |||||||||||||| ||||| ||  ||||||| |||||||||||    
T  20923653 taaatgatgtaaactttgacaagagaataagcaccaaggtatgttatagcgttg 20923600  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 20923488 - 20923436
Alignment:
Q  289 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaa 341  Q
    ||||| ||||||||| |||||||| |||||| | |||||||||||||| ||||    
T  20923488 agagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaa 20923436  T

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