View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17737_low_2 (Length: 770)
Name: NF17737_low_2
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 727; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 1 - 755
Target Start/End: Original strand, 1680672 - 1681426
Alignment:
| Q |
1 |
tgcagaaagcaacacctctctctggtccaatgcaaggttcccacctacagactgccttgaaaaatgagcctgaagcaaggcattggctttgacatgtgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1680672 |
tgcagaaagcaacacctctctctggtccaatgcaaggttcccacctacagactgccttgaaaaatgagcctgaagcaaggcattggctttgacatgtgga |
1680771 |
T |
|
| Q |
101 |
tctttaactttggggctttcaaaagaaaaccttaggtgatttattaacctgcgaaccacctcttcttccccaggccgtattggaaggtaagcatattctg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1680772 |
tctttaactttggggctttcaaaagaaaacctttggtgatttattaacctgcgaaccacctcttcttccccaggctgtattggaaggtaagcatattctg |
1680871 |
T |
|
| Q |
201 |
atgctgatgacagaatttccaaaagccccttcatttttgtgtttgaagtaatagatgatgaaaacctttcaattgttgtgtaacttatgttatagtagga |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1680872 |
atgctgatgacagaattttcaaaagccccttcatttttgtgtttgaagtaatatatgatgaaaacctttcaattgttgtgtaacttatgttatagtagga |
1680971 |
T |
|
| Q |
301 |
tgatatcattccaagattaagaggagacaaatgtatatcatcctctatagaaacacacttgcttgcttccaaatcactcaatgtattttccaccaactca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1680972 |
tgatatcattccaagattaagaggagacaaatgtatatcatcctctatagaaacacacttgcttgcttccaaatcactcaatgtattttccaccaactca |
1681071 |
T |
|
| Q |
401 |
gagaggtaatcagaaagatgcctgtgactaactccttgtaaattgtaatagttgggattctgggtgagacgcctgtacatgaatgtccatgtaagataat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1681072 |
gagaggtaatcagaaagatgcctgtgactaactccttgtaaattgtaatagttgggattctgggtgagacgcctgtacatgaatgtccatgtaagataat |
1681171 |
T |
|
| Q |
501 |
ctacagcgtcttgcttgttttcaataattccagcaacaatttcagcattcaaattatcatgtaaaaagtgatgaagatgactttcaaccgggaatgcttc |
600 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1681172 |
ctacatcgtcttgcttgttttcaataattccagcaacaatttcagcattcatattatcatgtaaaaagtgatgaagatgactttcaaccgggaatgcttc |
1681271 |
T |
|
| Q |
601 |
gaacaaaaactttttgtaatactccttagaaggtgcatggcataagatgacacactttccagaatggtccaccaaaggacgactggcatgacccatcatc |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1681272 |
gaacaaaaactttttgtaatactccttagaaggtgcatggcataagatgacacactttccagaatggtccaccaaaggacgactggcatgacccatcatc |
1681371 |
T |
|
| Q |
701 |
tgcagaagatcagtaacagggtagtctgtctgtgcattccccccatcatagtatt |
755 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1681372 |
tgcagaagatcagtaacagggtagtctgtctgtgcattctccccatcatagtatt |
1681426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 1 - 753
Target Start/End: Complemental strand, 2800056 - 2799304
Alignment:
| Q |
1 |
tgcagaaagcaacacctctctctggtccaatgcaaggttcccacctacagactgccttgaaaaatgagcctgaagcaaggcattggctttgacatgtgga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2800056 |
tgcagaaagcaacacctctctctggtccaatgcaaggttcccacctacaaactgccatgaaaaatgagcctgaagcaaggcattggctttgacatgtgga |
2799957 |
T |
|
| Q |
101 |
tctttaactttggggctttcaaaagaaaaccttaggtgatttattaacctgcgaaccacctcttcttccccaggccgtattggaaggtaagcatattctg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2799956 |
tctttaactttggggctttcaaaagaaaaccttaggtgatttattaacctgcgaaccacctcttcttccccaggcagtattggaaggtaagcatattctg |
2799857 |
T |
|
| Q |
201 |
atgctgatgacagaatttccaaaagccccttcatttttgtgtttgaagtaatagatgatgaaaacctttcaattgttgtgtaacttatgttatagtagga |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2799856 |
atgctgatgacagaatttacaaaagccccttcattttagtgtttgaagtaataaatgatgaaaacctttcaattgttgtgtaacttatgttatagtagga |
2799757 |
T |
|
| Q |
301 |
tgatatcattccaagattaagaggagacaaatgtatatcatcctctatagaaacacacttgcttgcttccaaatcactcaatgtattttccaccaactca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2799756 |
tgatatcattccaagattaagaggagacaaatgtatatcatcctctatagaaacacacttgcttgcttccaaatcactcaatgtattttccaccaactca |
2799657 |
T |
|
| Q |
401 |
gagaggtaatcagaaagatgcctgtgactaactccttgtaaattgtaatagttgggattctgggtgagacgcctgtacatgaatgtccatgtaagataat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2799656 |
gagaggtaatcagaaagatgcctgtgactaactccttgtaaattgtaatagttgggattctgggtgagacgcctgtacatgaatgtccatgtaagataat |
2799557 |
T |
|
| Q |
501 |
ctacagcgtcttgcttgttttcaataattccagcaacaatttcagcattcaaattatcatgtaaaaagtgatgaagatgactttcaaccgggaatgcttc |
600 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2799556 |
caacaacgtcttgcttgttttcaataattccagcaacaatttcagcattcaaattatcatgtaaaaagtgatgaagatgactttcaaccgggaatgcttc |
2799457 |
T |
|
| Q |
601 |
gaacaaaaactttttgtaatactccttagaaggtgcatggcataagatgacacactttccagaatggtccaccaaaggacgactggcatgacccatcatc |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2799456 |
gaacaaaaactttttgtaatactccttagaaggtgcatggcataagatgacacactttccagaatggtccaccaaaggacgactggcatgacccatcatc |
2799357 |
T |
|
| Q |
701 |
tgcagaagatcagtaacagggtagtctgtctgtgcattccccccatcatagta |
753 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2799356 |
tgcagaagatcagtaacagggtagtctgtctgtgcattctccccatcatagta |
2799304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 739
Target Start/End: Complemental strand, 29269232 - 29268494
Alignment:
| Q |
1 |
tgcagaaagcaacacctctctctggtccaatgcaaggttcccacctacagactgccttgaaaaatgagcctgaagcaaggcattggctttgacatgtgga |
100 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| || |||||||| ||||| ||||| || ||||| ||||| ||||||||||| || || ||||| ||| |
|
|
| T |
29269232 |
tgcagaaagcagtacctccctctggtccaatgatagattcccaccaacagattgcctagagaaatgggcctgcagcaaggcattagccttcacatgagga |
29269133 |
T |
|
| Q |
101 |
tctttaactttggggctttcaaaagaaaaccttaggtgatttattaacctgcgaaccacctcttcttccccaggccgtattggaaggtaagcatattctg |
200 |
Q |
| |
|
|| | ||||| ||| ||||||| ||||||||| |||| || |||||||| ||||||||||||||||||||||| ||||||||||||| |||||| |||| |
|
|
| T |
29269132 |
tccgtgacttttgggttttcaaaggaaaacctttggtggttgattaacctacgaaccacctcttcttccccaggtcgtattggaaggtgagcatactctg |
29269033 |
T |
|
| Q |
201 |
atgctgatgacagaatttccaaaagccccttcatttttgtgtttgaagtaatagatgatgaaaacctttcaattgttgtgtaacttatgttatagtagga |
300 |
Q |
| |
|
|||| |||||||||| ||||| | |||||||||||||| |||||||| | ||||||||||||||||| |||||||||||||| |||| ||| || || |
|
|
| T |
29269032 |
atgcagatgacagaacctccaacaaacccttcatttttgtttttgaagtcaacgatgatgaaaacctttcgattgttgtgtaactgatgtaataatatga |
29268933 |
T |
|
| Q |
301 |
tgatatcattccaagattaagaggagacaaatgtatatcatcctctatagaaacacacttgcttgcttccaaatcactcaatgtattttccaccaactca |
400 |
Q |
| |
|
| |||||||||||| || |||||||| | | ||||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||| ||| |
|
|
| T |
29268932 |
agctatcattccaaggtttagaggagaaaggtccatatcatcctcaatagaaacacacttgcttgcttctaagtcgctcaatgtattttccaccatctct |
29268833 |
T |
|
| Q |
401 |
gagaggtaatcagaaagatgcctgtgactaactccttgtaaattgtaatagttgggattctgggtgagacgcctgtacatgaatgtccatgtaagataat |
500 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
29268832 |
gagaggtggtcagaaagatgtctgtgacttactccttgtaaattgtaatagttgggattctgtgtgagcctcctgtacatgaatgtccatgtaagataat |
29268733 |
T |
|
| Q |
501 |
ctacagcgtcttgcttgttttcaataattccagcaacaatttcagcattcaaattatcatgtaaaaagtgatgaagatgactttcaaccgggaatgcttc |
600 |
Q |
| |
|
| ||||| |||||||||||||||||||| ||||||||||||||||||||||| || || || || |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
29268732 |
caacagcatcttgcttgttttcaataatcccagcaacaatttcagcattcaagttgtcgtgcaagaagtgatgaagatggctttcaactgggaatgcttc |
29268633 |
T |
|
| Q |
601 |
gaacaaaaactttttgtaatactccttagaaggtgcatggcataagatgacacactttccagaatggtccaccaaaggacgactggcatgacccatcatc |
700 |
Q |
| |
|
||| |||||| ||||| ||||| || |||||| ||||||||||||||||| |||||||||| ||| || |||||||| ||||||||||||||||| |
|
|
| T |
29268632 |
atacagaaacttcttgtagtactctttgcgaggtgcgtggcataagatgacacattttccagaattgtctactaaaggacggctggcatgacccatcatt |
29268533 |
T |
|
| Q |
701 |
tgcagaagatcagtaacagggtagtctgtctgtgcattc |
739 |
Q |
| |
|
||||| | ||||||||||||||| |||||||| |||||| |
|
|
| T |
29268532 |
tgcagcaaatcagtaacagggtaatctgtctgggcattc |
29268494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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