View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_25 (Length: 367)
Name: NF17737_low_25
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 349
Target Start/End: Original strand, 6066825 - 6067157
Alignment:
| Q |
17 |
cacagaaggatgatatcaaaccgcgaatcagcgcgtcgttcacgcatgaggaagcagaaacaccttgatgagctttggtcacaagttctttggctaagga |
116 |
Q |
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| T |
6066825 |
cacagaaggatgatatcaaaccgcgaatcagcgcgtcgttcacgcatgaggaagcagaaacaccttgatgagctttggtcacaagttctttggctaagga |
6066924 |
T |
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| Q |
117 |
atgaaaatcatcaacttatagagaaacttaaccatgtttctgagaatcatgatcaagttgttcaagagaatgctcagcttaaagaagaagctttggaact |
216 |
Q |
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| T |
6066925 |
atgaaaatcatcaacttatagagaaacttaaccatgtttctgagaatcatgatcaagttgttcaagagaatgctcagcttaaagaagaagctttggaact |
6067024 |
T |
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| Q |
217 |
tcgacaaatgataaaagatatgcagattcatagtcctttaatcccttcttttagtcctttggatgatacatatcttagagatgattcttcaaacaattcc |
316 |
Q |
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| T |
6067025 |
tcgacaaatgataaaagatatgcagattcatagtcctttaatcccttcttttagtcctttggatgatacatatcttagagatgattcttcaaacaattcc |
6067124 |
T |
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| Q |
317 |
atctcaagttcaatggatcttcttggctgattt |
349 |
Q |
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| T |
6067125 |
atctcaagttcaatggatcttcttggttgattt |
6067157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 5744823 - 5745028
Alignment:
| Q |
21 |
gaaggatgatatcaaaccgcgaatcagcgcgtcgttcacgcatgaggaagcagaaacaccttgatgagctttggtcacaagttctttggctaaggaatga |
120 |
Q |
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| T |
5744823 |
gaagaatggtatcgaaccgagagtcagcacgccggtcgcgaatgaggaaacaaaaacagcttgatgagctttggtcacaagttgtttggctaaggaatga |
5744922 |
T |
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| Q |
121 |
aaatcatcaacttatagagaaacttaaccatgtttctgagaatcatgatcaagttgttcaagagaatgctcagcttaaagaagaagctttggaacttcga |
220 |
Q |
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| T |
5744923 |
aaatcatcaattactagataagctcaacaatttctgtgagactcatgataaagttgtccaagagaatgttcaattgaaagaacaagcttcggaacttcga |
5745022 |
T |
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| Q |
221 |
caaatg |
226 |
Q |
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|||||| |
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| T |
5745023 |
caaatg |
5745028 |
T |
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