View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_27 (Length: 361)
Name: NF17737_low_27
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 170 - 338
Target Start/End: Original strand, 19694085 - 19694253
Alignment:
| Q |
170 |
actgagtcataattttaaacataccttctgccagcaacatccatgagcctcatcgaaatagctacgcaaggaagcatacagaatgatgtaataatattaa |
269 |
Q |
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| T |
19694085 |
actgagtcatagttttaaacataccttctgccggcaacatccatgagccttaccgaaatagctatgcaaggaagcatacagaatgatgtaataatattaa |
19694184 |
T |
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| Q |
270 |
caagaaaagaagcagatattgagctgatgcctaaatttgatagaagagatcctactcctgcctgctcaa |
338 |
Q |
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| T |
19694185 |
caagaaaagaagcagatattgagctgatgcctaaatttgatagaagagatcctactcctgcctgctcaa |
19694253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 19693933 - 19694077
Alignment:
| Q |
1 |
ataggaagaagtacttgtgagtatacaaattaagttaatctactggcataagtacttgtgaagttgtatcggagattttatagaaacaacttattacatg |
100 |
Q |
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| T |
19693933 |
ataggaaaaagtacttgtaaacatacaaattaagctaatctactggcataagtacttgtgaaattgtatgggagagtttatagaaacaacttattacatg |
19694032 |
T |
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| Q |
101 |
tttataactggtgttttcagcttactttcataaaaactgaaatag |
145 |
Q |
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| T |
19694033 |
ttaataactggtgttttcagcttactttcacaaaaactgaaatag |
19694077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 186 - 338
Target Start/End: Original strand, 9951203 - 9951355
Alignment:
| Q |
186 |
aaacataccttctgccagcaacatccatgagcctcatcgaaatagctacgcaaggaagcatacagaatgatgtaataatattaacaagaaaagaagcaga |
285 |
Q |
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| T |
9951203 |
aaacatacctcctaccagcaacatccatgagccttatcgcaatagctatacaagggagcatacagaatgttgtaattatatttacaagaaaagaagcaga |
9951302 |
T |
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| Q |
286 |
tattgagctgatgcctaaatttgatagaagagatcctactcctgcctgctcaa |
338 |
Q |
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| T |
9951303 |
tattgaactgatgcctaaatttgatagaagagcccctactcctgcctgctcaa |
9951355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 7674734 - 7674684
Alignment:
| Q |
78 |
ttatagaaacaacttattacatgtttataactggtgttttcagcttactttca |
130 |
Q |
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| T |
7674734 |
ttatggaaacaacttatgacatgtttataa--ggtgttttcagcttattttca |
7674684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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