View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_29 (Length: 359)
Name: NF17737_low_29
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 14167310 - 14167641
Alignment:
| Q |
18 |
aggagtgcttgtagcgtttgacgtaagcacgtctcacattcaagagctcttcgggggagagaacagcagaaatttccacaatgacattgtaatttttgcc |
117 |
Q |
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| T |
14167310 |
aggagtgcttgtagcgtttgacgtaagcacgtctcacattcaagagctcttcgggggagagaacagcagaaatttccacaatgacattgtaatttttgcc |
14167409 |
T |
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| Q |
118 |
actcttgatagcaacatttgccaaaacagcatcacgctccgcaggttcaagaatccaacggtacacagctttctgttccgaaattcatcaatacacaaaa |
217 |
Q |
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| T |
14167410 |
actcttgatagcaacatttgccaaaacagcatcacgctccgcaggttcaagaatccaacggtacacagctttctgttccgaaattcatcaatacacaaaa |
14167509 |
T |
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| Q |
218 |
taagtttcaaaaacatgtctaatagaacattgacaatatcatgtaccaaagaaacagacataaacaatttcannnnnnncaatgttaatcatcatggtaa |
317 |
Q |
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| T |
14167510 |
taagtttcaaaaacatgtctaatagaacattgacaatatcatgtaccaaagaaacagacataaacaatttcatttttttcaatgttaatcatcatggtaa |
14167609 |
T |
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| Q |
318 |
taaatcaatatgatacctcaaagtctcctttg |
349 |
Q |
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| T |
14167610 |
taaatcaatatgatacctcaaagtctcctttg |
14167641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 14174337 - 14174403
Alignment:
| Q |
121 |
cttgatagcaacatttgccaaaacagcatcacgctccgcaggttcaagaatccaacggtacacagct |
187 |
Q |
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| T |
14174337 |
cttgatggctacattggccaaaacagcatcgcgatccgcaggttccagcatccaacggtacacagct |
14174403 |
T |
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