View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_3 (Length: 711)
Name: NF17737_low_3
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 63 - 696
Target Start/End: Original strand, 41231438 - 41232085
Alignment:
| Q |
63 |
cacacaagaagaacaaattgaaatgtgttgtcacagtcactatcaagtaataattttgttgtagtgtcccaaaatgtgttactaataggcacatatttaa |
162 |
Q |
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| T |
41231438 |
cacataagaagaacaaattgaaatgtgttgtcacagtcactatcaagtaataattttgttgtagtgtcccaaaatgtgttactaataggcacatatttaa |
41231537 |
T |
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| Q |
163 |
attcaggttttacgttttttctatgtactaggtaggagccagt---------------acacacttttttctaattgttaannnnnnnatggtgttaact |
247 |
Q |
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| T |
41231538 |
attcaggttttacgttttttctatgtactaggtaggagccagtttgtgtacagtatgcacacacttttgtctaattgttaatttttttatggtgttaact |
41231637 |
T |
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| Q |
248 |
tctgttcaaaggggaaggggatcctaccaaaaacacttgagttgaatcacttgattaattttttaactgttgtataaagatggttgagtaaaaaaggaaa |
347 |
Q |
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| T |
41231638 |
tctgttcaaaggggaaggggatcctaccaaaaacacttgagttgaatcacttgattaattttttaactgttgtataa-gatggtcgagtaaaaaaggaaa |
41231736 |
T |
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| Q |
348 |
tacataaaatggctaatcaatttggaacctatttgtaaaccatcaataaggagtaacactccaatgccatagtgaaaattcaaacttctaattacacact |
447 |
Q |
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| T |
41231737 |
tacataaaatggctaatcaatttggaacctatttgtaaaccatcaataaggagtaacactccaatgccatagtgaaaattcaaacttctaattacacact |
41231836 |
T |
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| Q |
448 |
caaaatcaataaataaaaagtggagttcgtaatcatttgtaccacacatagccaaatcgaatgatagtaaggaaaactgctgaaccnnnnnnngtagtaa |
547 |
Q |
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| T |
41231837 |
caaaatcaataaataaaaagtggagttcgtaatcatttgtaccacacatagccaaatcgaatgatattaaggaaaactgctgaaccaaaaaaagcagtaa |
41231936 |
T |
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| Q |
548 |
ggaagactctttaacattctaaatgtggaggaaaaatgtaactcaatgggggttggcatgtctaatcagcacatctttgtgaacaaacaaaatgaaagta |
647 |
Q |
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| T |
41231937 |
ggaagactctttaacattctaaatgtggaggaaaaatgtaactcaatgggggttggcatgtctaatcagcacatctttgtgaacaaacaaaatgaaagta |
41232036 |
T |
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| Q |
648 |
tgcaactacttccaaagggaaaaaagtgtgcataaactaactcctacct |
696 |
Q |
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| T |
41232037 |
tgcaactacttccaaagggaaaaaagtgtgcataaactaactcctacct |
41232085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 41231283 - 41231323
Alignment:
| Q |
9 |
ccaagaatatatggctttttgatataagagttctcaatagt |
49 |
Q |
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| T |
41231283 |
ccaagaatatatggctttttgatataagagttctcattagt |
41231323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 686
Target Start/End: Original strand, 41531153 - 41531248
Alignment:
| Q |
599 |
gttggcatgtctaatcagcacatctttgtgaacaaacaaaatgaaagt--------atgcaactacttccaaagggaaaaaagtgtgcataaacta |
686 |
Q |
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| T |
41531153 |
gttgtcatgtctgatcagcacatctttgtgaacaaacgacatgtaagtaaccaagtatgcaactacttccaaagggaaaaacgtgtgtagaaacta |
41531248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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