View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17737_low_33 (Length: 327)

Name: NF17737_low_33
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17737_low_33
NF17737_low_33
[»] chr4 (13 HSPs)
chr4 (163-317)||(4334211-4334365)
chr4 (163-317)||(4322291-4322445)
chr4 (163-314)||(4351891-4352042)
chr4 (163-317)||(4125629-4125783)
chr4 (163-317)||(4359069-4359223)
chr4 (174-317)||(4343600-4343743)
chr4 (18-99)||(4334429-4334510)
chr4 (163-314)||(4134970-4135122)
chr4 (30-71)||(4352152-4352193)
chr4 (219-315)||(6751486-6751582)
chr4 (193-315)||(6547109-6547231)
chr4 (30-75)||(4322126-4322170)
chr4 (18-66)||(4359343-4359391)
[»] chr6 (22 HSPs)
chr6 (169-317)||(5104067-5104215)
chr6 (169-317)||(5094700-5094848)
chr6 (169-317)||(5158696-5158844)
chr6 (173-317)||(5342353-5342497)
chr6 (169-314)||(5424415-5424560)
chr6 (169-317)||(5369119-5369267)
chr6 (169-317)||(5068269-5068417)
chr6 (163-314)||(5175528-5175679)
chr6 (163-302)||(5355805-5355944)
chr6 (173-302)||(5395717-5395846)
chr6 (205-314)||(5277355-5277464)
chr6 (193-317)||(5285364-5285488)
chr6 (200-308)||(5382316-5382424)
chr6 (187-302)||(5183165-5183280)
chr6 (174-317)||(5261346-5261489)
chr6 (169-317)||(5349034-5349184)
chr6 (170-317)||(5445736-5445883)
chr6 (171-315)||(5074931-5075072)
chr6 (163-314)||(5432069-5432220)
chr6 (165-309)||(5133096-5133240)
chr6 (169-309)||(5148154-5148294)
chr6 (253-315)||(5691390-5691452)
[»] chr7 (1 HSPs)
chr7 (173-315)||(36215091-36215233)
[»] scaffold0294 (1 HSPs)
scaffold0294 (196-308)||(9890-10002)
[»] chr5 (2 HSPs)
chr5 (218-309)||(8876470-8876561)
chr5 (173-319)||(15801824-15801970)
[»] chr2 (1 HSPs)
chr2 (174-317)||(22585521-22585664)
[»] chr8 (4 HSPs)
chr8 (170-319)||(3326071-3326220)
chr8 (268-319)||(7165853-7165904)
chr8 (173-314)||(3313695-3313836)
chr8 (259-311)||(3392763-3392815)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 163 - 317
Target Start/End: Complemental strand, 4334365 - 4334211
Alignment:
Q  163 gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4334365 gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcatgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 4334266  T
Q  263 gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4334265 gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctt 4334211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 163 - 317
Target Start/End: Original strand, 4322291 - 4322445
Alignment:
Q  163 gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 262  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4322291 gtatatgaagttcttacagtatgttctgacaatacatcaagcacatcatcatgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 4322390  T
Q  263 gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctt 317  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  4322391 gaatgatttcccttcccatatctcgcagcaaatcatgcatgccaagcttgttctt 4322445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 163 - 314
Target Start/End: Complemental strand, 4352042 - 4351891
Alignment:
Q  163 gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 262  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||| |  |||||||||||||||||||||||||||||||| |||||||||||||||    
T  4352042 gtatatgaagttcttacagtatgttttgacaatacatcaagcacatccccgtgaaaccacaacctactacgttcctcaggctcctttggtgatttctcac 4351943  T
Q  263 gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgtt 314  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4351942 gaatgatttctcttcccatatctcgcagcaaatcatgcatgccaagcttgtt 4351891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 163 - 317
Target Start/End: Original strand, 4125629 - 4125783
Alignment:
Q  163 gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 262  Q
    ||||| ||| ||||||| |||||||||||||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  4125629 gtatatgaaattcttaccgtatgttctgacaatatatcaatcacatcctcatgataccacaacctactacgttcctcaggctccattggtgatttctcac 4125728  T
Q  263 gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctt 317  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4125729 gaatgatttctcttcccatatctcgcagcaaatcatgcatgccaagcttgttctt 4125783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 163 - 317
Target Start/End: Complemental strand, 4359223 - 4359069
Alignment:
Q  163 gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 262  Q
    ||||| ||||||||||| ||||||||| |||| ||||||| |||||||||| ||||||||| ||||||| |||||||||||||| |||||||||||||||    
T  4359223 gtatatgaagttcttacggtatgttctaacaagacatcaatcacatcctcatgaaaccacagcctactatgttcctcaggctcctttggtgatttctcac 4359124  T
Q  263 gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctt 317  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4359123 gaatgatttctcttcccatatctcggagcaaatcatgcatgccaagcttgttctt 4359069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 174 - 317
Target Start/End: Complemental strand, 4343743 - 4343600
Alignment:
Q  174 tcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttct 273  Q
    |||||||||||||||| |||| ||||||||||| || ||| ||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||    
T  4343743 tcttacagtatgttctaacaagacatcaagcacgtcttcatgaaaccacaacctactatgttcctcaggctcctttggcgatttctcacgaatgatttct 4343644  T
Q  274 cttcccatatctcgaagcaaatcatgcatgccaagcttgttctt 317  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  4343643 cttcccatatctcgcagcaaatcatgcatgccaagcttgttctt 4343600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 4334510 - 4334429
Alignment:
Q  18 aaaatgattaataaccaaactaatattcaaagcttttgcgctaacaacagcacaaatgtattttgcttttaaagtttgagat 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4334510 aaaatgattaataaccaaactaatattcaaagcttttgcgctaacaacagcacaaatgtattttgcttttaaagtttgagat 4334429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 163 - 314
Target Start/End: Original strand, 4134970 - 4135122
Alignment:
Q  163 gtataagaagttcttacagtatgttctgacaa-tacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctca 261  Q
    |||||||| ||||||||| | |||| |||||| ||||||| | ||||||||| ||||||| ||||||||||| | |||  | | | ||||||||||||      
T  4134970 gtataagacgttcttacattttgttatgacaaatacatcatgaacatcctcatgaaaccataacctactacgcttctcgagtttctttggtgatttctgt 4135069  T
Q  262 cgaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgtt 314  Q
    || ||||| ||||||||||||||||| |||||||||||||| |||||||||||    
T  4135070 cggatgatctctcttcccatatctcgtagcaaatcatgcattccaagcttgtt 4135122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 4352193 - 4352152
Alignment:
Q  30 aaccaaactaatattcaaagcttttgcgctaacaacagcaca 71  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  4352193 aaccaaactaatattgaaagcttttgcgctaacaacagcaca 4352152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 6751582 - 6751486
Alignment:
Q  219 ccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttc 315  Q
    |||||||||||| || | |||||| |||| |||||||| ||||  ||| |||| ||||||||| ||||  | |||||||||||| | ||||||||||    
T  6751582 ccacaacctactgcgattctcaggatccagtggtgattcctcataaattatttgtcttcccatgtctctcaacaaatcatgcattctaagcttgttc 6751486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 315
Target Start/End: Original strand, 6547109 - 6547231
Alignment:
Q  193 aatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagca 292  Q
    |||||||||||| ||||||||||   |||||||||||| || | ||| || || | ||| |||| ||||  ||| |||| ||||||||| ||||  | ||    
T  6547109 aatacatcaagcgcatcctcacggcgccacaacctactgcggttctccggatcaaatggcgattcctcataaattatttgtcttcccatgtctctcaaca 6547208  T
Q  293 aatcatgcatgccaagcttgttc 315  Q
    |||||||||| | ||||||||||    
T  6547209 aatcatgcattctaagcttgttc 6547231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 4322126 - 4322170
Alignment:
Q  30 aaccaaactaatattcaaagcttttgcgctaacaacagcacaaatg 75  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||||    
T  4322126 aaccaaactaa-attcaaagcttttgtgctaacaacagaacaaatg 4322170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 4359391 - 4359343
Alignment:
Q  18 aaaatgattaataaccaaactaatattcaaagcttttgcgctaacaaca 66  Q
    ||||||||| | ||||||||||||||||||| ||| || ||||||||||    
T  4359391 aaaatgattcacaaccaaactaatattcaaaacttctgtgctaacaaca 4359343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 169 - 317
Target Start/End: Original strand, 5104067 - 5104215
Alignment:
Q  169 gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga 268  Q
    ||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||||||| | ||| |||||  |||||  ||||||||||||||||||||    
T  5104067 gaagttcttaccgtatgttctgacaatacatgaagcacatcgtcatgaaaccacaacctgcaacgctcctcgagctcctctggtgatttctcacgaatga 5104166  T
Q  269 tttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctt 317  Q
    ||||||||||||||||||| | |||||||||||| ||||| ||||||||    
T  5104167 tttctcttcccatatctcgcaacaaatcatgcattccaagtttgttctt 5104215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 169 - 317
Target Start/End: Complemental strand, 5094848 - 5094700
Alignment:
Q  169 gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga 268  Q
    |||||||||||||| |||||||| ||||||| ||||||||| ||| ||||||||||||| | ||| |||||  |||||  ||||||||||||||||||||    
T  5094848 gaagttcttacagtttgttctgataatacatgaagcacatcatcatgaaaccacaacctgcaacgctcctcgagctcctctggtgatttctcacgaatga 5094749  T
Q  269 tttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctt 317  Q
    ||||||||||||||||||| | |||||||||||| ||||| ||||||||    
T  5094748 tttctcttcccatatctcgcaacaaatcatgcattccaagtttgttctt 5094700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 169 - 317
Target Start/End: Original strand, 5158696 - 5158844
Alignment:
Q  169 gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga 268  Q
    |||||||||||||| |||||||| ||||||| ||||||||| ||| ||||||||||||| | ||| |||||   ||||  ||||||||||||||||||||    
T  5158696 gaagttcttacagtttgttctgataatacatgaagcacatcgtcatgaaaccacaacctgcaacgctcctcgatctcctctggtgatttctcacgaatga 5158795  T
Q  269 tttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctt 317  Q
    ||||||||||||||||||| | |||||||||||| ||||| ||||||||    
T  5158796 tttctcttcccatatctcgcaacaaatcatgcattccaagtttgttctt 5158844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 173 - 317
Target Start/End: Complemental strand, 5342497 - 5342353
Alignment:
Q  173 ttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttc 272  Q
    ||||||| || |||||||| ||||||||||||||||||||   ||| |||||||| ||||| ||| || ||||| |||||||||||||||||| ||||||    
T  5342497 ttcttacggtttgttctgataatacatcaagcacatcctccttaaagcacaacctgctacgctccccaagctcctttggtgatttctcacgaacgatttc 5342398  T
Q  273 tcttcccatatctcgaagcaaatcatgcatgccaagcttgttctt 317  Q
    ||||||||||||||| |||||||| ||||| ||||| ||||||||    
T  5342397 tcttcccatatctcgcagcaaatcgtgcattccaagtttgttctt 5342353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 169 - 314
Target Start/End: Complemental strand, 5424560 - 5424415
Alignment:
Q  169 gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga 268  Q
    |||||||||||||| || ||||| ||||||| ||||||||||||| ||||||||||||| | ||| |||||  ||||   |||||||||| |||||||||    
T  5424560 gaagttcttacagtttgatctgataatacatgaagcacatcctcatgaaaccacaacctgcaacgctcctcgagctcttctggtgatttcccacgaatga 5424461  T
Q  269 tttctcttcccatatctcgaagcaaatcatgcatgccaagcttgtt 314  Q
    ||||||||||||||||||| | |||||||||||| ||||| |||||    
T  5424460 tttctcttcccatatctcgcaacaaatcatgcattccaagtttgtt 5424415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 169 - 317
Target Start/End: Complemental strand, 5369267 - 5369119
Alignment:
Q  169 gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga 268  Q
    |||| ||||||||| || ||||| ||||||| ||||||||||||| ||||||||||||| | ||| |||||  ||||   |||||||||| |||||||||    
T  5369267 gaagatcttacagtttgatctgataatacatgaagcacatcctcatgaaaccacaacctgcaacgctcctcgagctcttctggtgatttcccacgaatga 5369168  T
Q  269 tttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctt 317  Q
    ||||||||||||||||||| | |||||||||||| ||||| ||||||||    
T  5369167 tttctcttcccatatctcgcaacaaatcatgcattccaagtttgttctt 5369119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 169 - 317
Target Start/End: Original strand, 5068269 - 5068417
Alignment:
Q  169 gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga 268  Q
    |||||||||||||| |||||||| ||||| | |||| |||||||  ||||||||||||| | ||| |||||  ||||   |||||||||| |||||| ||    
T  5068269 gaagttcttacagtttgttctgataatacttgaagcgcatcctcctgaaaccacaacctgcaacgctcctcgagctcttctggtgatttcccacgaacga 5068368  T
Q  269 tttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctt 317  Q
    ||||||||||||||||||| | |||||||||||| ||||| ||||||||    
T  5068369 tttctcttcccatatctcgcaacaaatcatgcattccaagtttgttctt 5068417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 163 - 314
Target Start/End: Complemental strand, 5175679 - 5175528
Alignment:
Q  163 gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 262  Q
    ||||||||||||||||| || ||| |||  || ||||||   ||||||||| ||||||||||||| ||||| ||||||||||||||| ||| ||| | ||    
T  5175679 gtataagaagttcttacggtttgtcctgctaacacatcatcaacatcctcaagaaaccacaacctgctacgctcctcaggctccattcgtggtttattac 5175580  T
Q  263 gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgtt 314  Q
     ||||||||||||||||||||| || | ||||| |||||| |||||||||||    
T  5175579 aaatgatttctcttcccatatcccgcaacaaattatgcattccaagcttgtt 5175528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 163 - 302
Target Start/End: Original strand, 5355805 - 5355944
Alignment:
Q  163 gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 262  Q
    ||||| |||||||||||||  || ||||| || |||||||||||||| ||| ||| |||||| || |||||| ||||||| |||   |||||||||||||    
T  5355805 gtatatgaagttcttacagattgatctgataaaacatcaagcacatcatcatgaagccacaatctgctacgtgcctcagggtcctccggtgatttctcac 5355904  T
Q  263 gaatgatttctcttcccatatctcgaagcaaatcatgcat 302  Q
    ||| || |||||||||||||||||| ||||||||||||||    
T  5355905 gaacgacttctcttcccatatctcgtagcaaatcatgcat 5355944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 173 - 302
Target Start/End: Complemental strand, 5395846 - 5395717
Alignment:
Q  173 ttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttc 272  Q
    |||||||||| |||||||| |||||||| ||||| || | |  |||||||||||| ||||| ||||| |||||  ||||||| |||||||||| ||||||    
T  5395846 ttcttacagtttgttctgataatacatccagcacgtcattattaaaccacaacctgctacgctcctcgggctcttttggtgacttctcacgaacgatttc 5395747  T
Q  273 tcttcccatatctcgaagcaaatcatgcat 302  Q
    ||||||||||||||  ||||||||||||||    
T  5395746 tcttcccatatctcttagcaaatcatgcat 5395717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 205 - 314
Target Start/End: Complemental strand, 5277464 - 5277355
Alignment:
Q  205 acatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagcaaatcatgcatgc 304  Q
    ||||||||| ||||||||||||| ||||| ||||||||||||||| ||| ||| | || ||||||||||||||||||||| || | ||||| |||||| |    
T  5277464 acatcctcaagaaaccacaacctgctacgctcctcaggctccattcgtggtttattacaaatgatttctcttcccatatcccgcaacaaattatgcattc 5277365  T
Q  305 caagcttgtt 314  Q
    ||||||||||    
T  5277364 caagcttgtt 5277355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 193 - 317
Target Start/End: Original strand, 5285364 - 5285488
Alignment:
Q  193 aatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagca 292  Q
    |||||||||| |||||||||  || |||||||||| ||||||| |||||||  | ||||||||| ||||||||  ||| |||||||||||||||| ||||    
T  5285364 aatacatcaatcacatcctccggataccacaacctgctacgtttctcaggcctccttggtgattcctcacgaacaattcctcttcccatatctcgcagca 5285463  T
Q  293 aatcatgcatgccaagcttgttctt 317  Q
    || ||||||| |||||| |||||||    
T  5285464 aaccatgcattccaagcatgttctt 5285488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 200 - 308
Target Start/End: Complemental strand, 5382424 - 5382316
Alignment:
Q  200 caagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagcaaatcatg 299  Q
    |||| ||||||||| ||||||| ||||| ||||| |||||||| ||| |||||||||| |||||||||||||||||||||||||| |  | |||||||||    
T  5382424 caaggacatcctcatgaaaccataacctgctacgctcctcaggatcctttggtgatttttcacgaatgatttctcttcccatatcccttaacaaatcatg 5382325  T
Q  300 catgccaag 308  Q
    ||| |||||    
T  5382324 cattccaag 5382316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 187 - 302
Target Start/End: Original strand, 5183165 - 5183280
Alignment:
Q  187 tctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctc 286  Q
    ||||| ||||| |||| ||||||||    |||||||||||| ||||| |||||||||||  ||||||| |||||||||| ||||||||||||||||||||    
T  5183165 tctgataatacgtcaatcacatccttgttaaaccacaacctgctacgctcctcaggctcttttggtgacttctcacgaacgatttctcttcccatatctc 5183264  T
Q  287 gaagcaaatcatgcat 302  Q
      ||||||||||||||    
T  5183265 ttagcaaatcatgcat 5183280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 174 - 317
Target Start/End: Original strand, 5261346 - 5261489
Alignment:
Q  174 tcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttct 273  Q
    ||||||||| |||| ||| |||||||||| |||||||||  ||   |||||||| ||||||| |||||||  | ||||||||| ||||||||  ||||||    
T  5261346 tcttacagtttgttttgataatacatcaatcacatcctcctgatcacacaacctgctacgtttctcaggcctccttggtgattcctcacgaacaatttct 5261445  T
Q  274 cttcccatatctcgaagcaaatcatgcatgccaagcttgttctt 317  Q
    |||||||||||||| | |||| ||||||| |||||| |||||||    
T  5261446 cttcccatatctcgcaacaaaccatgcattccaagcatgttctt 5261489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 317
Target Start/End: Complemental strand, 5349184 - 5349034
Alignment:
Q  169 gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga 268  Q
    |||||||||||||| || ||||| || |||| ||||||||||||  ||||||| ||||| | ||| |||||  ||||   |||||||||| |||||||||    
T  5349184 gaagttcttacagtttgatctgataaaacatgaagcacatcctcctgaaaccagaacctgcaacgctcctcgagctcttctggtgatttcccacgaatga 5349085  T
Q  269 tttctcttcccatatctcgaagcaaatc--atgcatgccaagcttgttctt 317  Q
    ||||||||||||||||||| | ||||||  |||||| ||||| ||||||||    
T  5349084 tttctcttcccatatctcgcaacaaatcatatgcattccaagtttgttctt 5349034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 170 - 317
Target Start/End: Complemental strand, 5445883 - 5445736
Alignment:
Q  170 aagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgat 269  Q
    ||||||||||||| |||  ||| |||||||||| |||||||||  ||  ||||||||||||||||| |||||||  | ||||||||| ||||| || |||    
T  5445883 aagttcttacagtttgtcttgataatacatcaatcacatcctcctgatcccacaacctactacgtttctcaggcctccttggtgattcctcacaaacgat 5445784  T
Q  270 ttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttctt 317  Q
    | |||||||||||||||| |||  | ||||||| |||||| |||||||    
T  5445783 tcctcttcccatatctcgcagctgaccatgcattccaagcatgttctt 5445736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 315
Target Start/End: Original strand, 5074931 - 5075072
Alignment:
Q  171 agttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatt 270  Q
    |||||||||| | |||||||| |||||||||| ||| |||| |  |||||| || || |||||  ||||||||||   |  |||||| ||||||||||||    
T  5074931 agttcttacattttgttctgataatacatcaaacacgtccttatcaaaccataatctgctacgcccctcaggctc---ttctgatttttcacgaatgatt 5075027  T
Q  271 tctcttcccatatctcgaagcaaatcatgcatgccaagcttgttc 315  Q
    |||||||||||||| || |||||||||||||| ||||||||||||    
T  5075028 tctcttcccatatcacgcagcaaatcatgcattccaagcttgttc 5075072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 314
Target Start/End: Complemental strand, 5432220 - 5432069
Alignment:
Q  163 gtataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcac 262  Q
    ||||| |||||||||||||| |||  ||  |||||| ||   ||||||||| ||| ||||||||| ||| | |||||||| ||| ||||||  || | ||    
T  5432220 gtatatgaagttcttacagtttgtcttgctaatacaccatcaacatcctcaggaagccacaacctgctatgctcctcaggatcctttggtggattattac 5432121  T
Q  263 gaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgtt 314  Q
     ||||||||||||||||||||| || | |||||||||||| |||||||||||    
T  5432120 aaatgatttctcttcccatatcccgcaacaaatcatgcattccaagcttgtt 5432069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 309
Target Start/End: Original strand, 5133096 - 5133240
Alignment:
Q  165 ataagaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacga 264  Q
    ||||||||||||||| || |||| ||| | ||||||||||||||||||  |||||||||  || | ||| ||||||  | ||   |||||||  ||||||    
T  5133096 ataagaagttcttactgtttgttttgatagtacatcaagcacatcctcgtgaaaccacagtctgcaacgctcctcaaacacctccggtgattcttcacga 5133195  T
Q  265 atgatttctcttcccatatctcgaagcaaatcatgcatgccaagc 309  Q
    || |||||||||||||||||||  | |||||||||||| ||||||    
T  5133196 ataatttctcttcccatatctctcaacaaatcatgcattccaagc 5133240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 309
Target Start/End: Original strand, 5148154 - 5148294
Alignment:
Q  169 gaagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatga 268  Q
    ||||| |||||||| ||||| || || |||| ||||||||||  || ||||||||| ||||| || | ||||  |||  ||||||||| ||| || ||||    
T  5148154 gaagtacttacagtttgttcagataacacattaagcacatccgtactaaaccacaatctactccgattctcaacctcttttggtgattcctcgcgtatga 5148253  T
Q  269 tttctcttcccatatctcgaagcaaatcatgcatgccaagc 309  Q
    |||||||| |||| ||||| | |||||||||||| ||||||    
T  5148254 tttctcttgccatgtctcgcaacaaatcatgcattccaagc 5148294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 315
Target Start/End: Original strand, 5691390 - 5691452
Alignment:
Q  253 gatttctcacgaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttc 315  Q
    ||||||||||||| ||||||||||||||||||||| | |||||||||||| | |||| |||||    
T  5691390 gatttctcacgaacgatttctcttcccatatctcgcaacaaatcatgcattctaagcctgttc 5691452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 173 - 315
Target Start/End: Original strand, 36215091 - 36215233
Alignment:
Q  173 ttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttc 272  Q
    |||||||||| |||||||| |||||||||  ||| |||| |  |||||||||||| ||||| |||||| ||||| |||||||||||||||||||||| ||    
T  36215091 ttcttacagtttgttctgataatacatcagccacgtccttattaaaccacaacctgctacgctcctcaagctcctttggtgatttctcacgaatgatctc 36215190  T
Q  273 tcttcccatatctcgaagcaaatcatgcatgccaagcttgttc 315  Q
    ||||||||||||||| |||||||||||||| |||||| |||||    
T  36215191 tcttcccatatctcgcagcaaatcatgcattccaagcctgttc 36215233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 9890 - 10002
Alignment:
Q  196 acatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagcaaat 295  Q
    |||| ||||||||||||  ||||||| ||||||||||| |||||||| ||| |||||||||| |||||||||||||| |||||||||||||| |  ||||    
T  9890 acattaagcacatcctcttgaaaccataacctactacggtcctcaggatcccttggtgatttttcacgaatgatttcccttcccatatctcgtaataaat 9989  T
Q  296 catgcatgccaag 308  Q
    ||||||| |||||    
T  9990 catgcattccaag 10002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 218 - 309
Target Start/End: Complemental strand, 8876561 - 8876470
Alignment:
Q  218 accacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagc 309  Q
    |||||||||| ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||   | |||||||||||| ||||||    
T  8876561 accacaacctgctacgctcctcaggatcctttggtgatttctcacgaatgatttctcttcccatatctgtcaacaaatcatgcattccaagc 8876470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 319
Target Start/End: Complemental strand, 15801970 - 15801824
Alignment:
Q  173 ttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttc 272  Q
    ||||||| || ||||| | || ||||||||  ||||| |||  | ||||||| | | |||||| ||||||||||   |||||  | |||||||  |||||    
T  15801970 ttcttacggtttgttcggccagtacatcaactacatcttcaaaacaccacaatcgagtacgtttctcaggctcctcaggtgaactttcacgaacaatttc 15801871  T
Q  273 tcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttct 319  Q
    ||||||||| ||||| |||| | ||||||| ||||||||||| ||||    
T  15801870 tcttcccatgtctcgtagcagagcatgcattccaagcttgttattct 15801824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 317
Target Start/End: Original strand, 22585521 - 22585664
Alignment:
Q  174 tcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttct 273  Q
    ||||||||| |||| ||| ||||| |||| |||||||||  || || ||||||| ||||| | ||||||   | ||||||||| |||| |||  ||| ||    
T  22585521 tcttacagtttgttttgataatacgtcaatcacatcctccggatacaacaacctgctacgcttctcaggactctttggtgattcctcaagaacaattcct 22585620  T
Q  274 cttcccatatctcgaagcaaatcatgcatgccaagcttgttctt 317  Q
    |||||||||||||| |||||||||||||| |||||| |||||||    
T  22585621 cttcccatatctcgcagcaaatcatgcattccaagcctgttctt 22585664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 319
Target Start/End: Original strand, 3326071 - 3326220
Alignment:
Q  170 aagttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgat 269  Q
    |||||||||||||||||| || ||| |  ||| ||||||||||| |||||||||| |||||||| | | |||||||  |||  ||  | |||||||| ||    
T  3326071 aagttcttacagtatgttttgtcaaaatgtcatgcacatcctcatgaaaccacaatctactacgcttcccaggctcttttgcagaactttcacgaataat 3326170  T
Q  270 ttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttct 319  Q
    |||||||||||| ||||  | ||||  |||||| ||||||||||| ||||    
T  3326171 ttctcttcccatgtctcttatcaaacaatgcattccaagcttgttattct 3326220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 319
Target Start/End: Original strand, 7165853 - 7165904
Alignment:
Q  268 atttctcttcccatatctcgaagcaaatcatgcatgccaagcttgttcttct 319  Q
    |||||||||||||| |||| ||||||||||||||| ||||||||||| ||||    
T  7165853 atttctcttcccatgtctctaagcaaatcatgcattccaagcttgttattct 7165904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 314
Target Start/End: Complemental strand, 3313836 - 3313695
Alignment:
Q  173 ttcttacagtatgttctgacaatacatcaagcacatcctcacgaaaccacaacctactacgttcctcaggctccattggtgatttctcacgaatgatttc 272  Q
    ||||||||||||| || | || ||||||||  ||||||||| || ||||||| | |||||| |  |||||||||   |||||  | ||||| |  |||||    
T  3313836 ttcttacagtatggtcggtcagtacatcaactacatcctcatgataccacaatcgactacgcttttcaggctcctcaggtgaactttcacggacaatttc 3313737  T
Q  273 tcttcccatatctcgaagcaaatcatgcatgccaagcttgtt 314  Q
    || |||||| ||||| || ||||||||||| |||||||||||    
T  3313736 tcgtcccatgtctcgcagtaaatcatgcattccaagcttgtt 3313695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 3392763 - 3392815
Alignment:
Q  259 tcacgaatgatttctcttcccatatctcgaagcaaatcatgcatgccaagctt 311  Q
    |||||||  ||||| |||||||| ||||| |||||||||||||| ||||||||    
T  3392763 tcacgaacaatttcccttcccatgtctcgtagcaaatcatgcattccaagctt 3392815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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