View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17737_low_35 (Length: 323)

Name: NF17737_low_35
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17737_low_35
NF17737_low_35
[»] chr2 (19 HSPs)
chr2 (15-305)||(32310868-32311158)
chr2 (37-268)||(32813371-32813602)
chr2 (35-205)||(32792566-32792736)
chr2 (96-305)||(32799246-32799455)
chr2 (50-189)||(32563727-32563866)
chr2 (15-192)||(28213660-28213835)
chr2 (15-162)||(28222469-28222616)
chr2 (216-305)||(32306738-32306827)
chr2 (15-82)||(32790307-32790374)
chr2 (92-192)||(32785109-32785210)
chr2 (239-302)||(32563887-32563950)
chr2 (252-305)||(32792734-32792787)
chr2 (243-305)||(32786342-32786404)
chr2 (255-305)||(28213918-28213968)
chr2 (43-98)||(28148180-28148235)
chr2 (23-72)||(32799198-32799247)
chr2 (255-305)||(28222316-28222366)
chr2 (64-133)||(28179344-28179413)
chr2 (101-133)||(28211804-28211836)


Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 32311158 - 32310868
Alignment:
Q  15 cacagaagcagttgtgacttgcaatatcatatctaagaatcatttattaatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32311158 cacagaagcagttgtgacttgcaatatcatatctaagaatcatttattgatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaa 32311059  T
Q  115 taccttggaatccaagttttaataaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaacatttttcaacccag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32311058 taccttggaatccaagttttaataaaacataacagaacactttgacttgtttatatttattgcagccttgcaacactaaagtaaacatttttcaacccag 32310959  T
Q  215 tgccatcaaaatcaataaattctgtaacagctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagag 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32310958 tgccatcaaaatcaataaattctgtaacagctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagag 32310868  T

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Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 37 - 268
Target Start/End: Original strand, 32813371 - 32813602
Alignment:
Q  37 aatatcatatctaagaatcatttattaatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagttttaa 136  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32813371 aatatcatatctaagaatcatttattgatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagttttaa 32813470  T
Q  137 taaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaacatttttcaacccagtgccatcaaaatcaataaattc 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||||||||||||||    
T  32813471 taaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaacagtttttaacacagttccatcaaaatcaataaattc 32813570  T
Q  237 tgtaacagctgtcactttacatggccaaaact 268  Q
    |||||||  ||||| |||||||||||||||||    
T  32813571 tgtaacatttgtcattttacatggccaaaact 32813602  T

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Target: chr2; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 35 - 205
Target Start/End: Original strand, 32792566 - 32792736
Alignment:
Q  35 gcaatatcatatctaagaatcatttattaatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagtttt 134  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32792566 gcaatctcatatctaagaatcatttattgatctctaattgtaagagttcaatacggagcttatacaaaaatatacttcaataccttggaatccaagtttt 32792665  T
Q  135 aataaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaagtaaacatttt 205  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32792666 aataaagcataacagaacaatttgatttgtttatatttattgcagccttgcaacactatagtaaacatttt 32792736  T

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Target: chr2; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 96 - 305
Target Start/End: Original strand, 32799246 - 32799455
Alignment:
Q  96 atacaaaaatatacttcaataccttggaatccaagttttaataaaacataacagaacactttgatttgtttatatttattgcagccttgcaacactaaag 195  Q
    ||||||||||||||||||||||||||||||| ||||||||||||  ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||    
T  32799246 atacaaaaatatacttcaataccttggaatctaagttttaataaggcataaaagaacactttgatttgttgatatttattgcagccttgcaacactagag 32799345  T
Q  196 taaacatttttcaacccagtgccatcaaaatcaataaattctgtaacagctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttac 295  Q
    ||||||| ||| ||  ||||||||  |||||  ||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32799346 taaacatattttaaaacagtgccacaaaaatttataaattctataatagctgtcactttacatggccaaaactaccctaaaatgtgtatgagaaacttac 32799445  T
Q  296 ataggaagag 305  Q
    ||||||||||    
T  32799446 ataggaagag 32799455  T

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Target: chr2; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 50 - 189
Target Start/End: Original strand, 32563727 - 32563866
Alignment:
Q  50 agaatcatttattaatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagttttaataaaacataacag 149  Q
    ||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32563727 agaatcatttattgatatctaattgtaagagctgaatagggagcttataaaaaaatatacttcaataccttggaatccaagttttaataaagcataacag 32563826  T
Q  150 aacactttgatttgtttatatttattgcagccttgcaaca 189  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32563827 aacactttgatttgtttatatttattgcagccttgcaaca 32563866  T

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Target: chr2; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 28213660 - 28213835
Alignment:
Q  15 cacagaagcagttgtgacttgcaatatcatatctaagaatcatttattaatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaa 114  Q
    |||||||||||||||||||||||||||||||||  ||||| |||     |||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  28213660 cacagaagcagttgtgacttgcaatatcatatcatagaattattccaagatctctaattgtaagagttgaatagggagctta--caaaaatatacttcaa 28213757  T
Q  115 taccttggaatccaagttttaataaaacataacagaacactttgatttgtttatatttattgcagccttgcaacacta 192  Q
    ||||||||||||||||||||| |||  ||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  28213758 taccttggaatccaagttttattaaggcataacagaacactttgatttattgatatttattgcagccttgcaacacta 28213835  T

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Target: chr2; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 15 - 162
Target Start/End: Complemental strand, 28222616 - 28222469
Alignment:
Q  15 cacagaagcagttgtgacttgcaatatcatatctaagaatcatttattaatctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaa 114  Q
    ||||||||||| ||||||||| | |||||||||||||||| |||  || |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28222616 cacagaagcagctgtgacttgtattatcatatctaagaatgattccttgatctataattgtaagagttgaatagggagcttatacaaaaatatacttcaa 28222517  T
Q  115 taccttggaatccaagttttaataaaacataacagaacactttgattt 162  Q
    ||||||||||||||||||||| |||  |||||||||||||||||||||    
T  28222516 taccttggaatccaagttttattaaggcataacagaacactttgattt 28222469  T

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Target: chr2; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 216 - 305
Target Start/End: Complemental strand, 32306827 - 32306738
Alignment:
Q  216 gccatcaaaatcaataaattctgtaacagctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagag 305  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32306827 gccatcaaaatcaataaattctgtaaaagctgtaactttacatggccaaaactaccctaaaatgtgtatgagaaacttacataggaagag 32306738  T

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Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 32790307 - 32790374
Alignment:
Q  15 cacagaagcagttgtgacttgcaatatcatatctaagaatcatttattaatctctaattgtaagagtt 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32790307 cacagaagcagttgtgacttgcaatatcatatctaagaatcatttattaatctctaattgtaagagtt 32790374  T

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Target: chr2; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 92 - 192
Target Start/End: Original strand, 32785109 - 32785210
Alignment:
Q  92 gcttatacaaaa-atatacttcaataccttggaatccaagttttaataaaacataacagaacactttgatttgtttatatttattgcagccttgcaacac 190  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||  |||||||||||| ||| ||||||| ||||||| ||||||||||||||||    
T  32785109 gcttattcaaaagatatacttcaataccttggaatccaagttttaataaggcataacagaacattttcatttgttgatatttactgcagccttgcaacac 32785208  T
Q  191 ta 192  Q
    ||    
T  32785209 ta 32785210  T

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Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 239 - 302
Target Start/End: Original strand, 32563887 - 32563950
Alignment:
Q  239 taacagctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaa 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32563887 taacagctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacattggaa 32563950  T

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Target: chr2; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 32792734 - 32792787
Alignment:
Q  252 tttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagag 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32792734 tttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagag 32792787  T

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Target: chr2; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 32786342 - 32786404
Alignment:
Q  243 agctgtcactttacatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagag 305  Q
    ||||||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||||    
T  32786342 agctgtcactttacatggccaaaaccaccctaaaatatgtgtgagaaacttacataggaagag 32786404  T

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Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 305
Target Start/End: Original strand, 28213918 - 28213968
Alignment:
Q  255 acatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagag 305  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  28213918 acatggccaaaactaccctcaaatgtgtgtgagaaacttacataagaagag 28213968  T

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Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 28148235 - 28148180
Alignment:
Q  43 atatctaagaatcatttattaatctctaattgtaagagttgaatagggagcttata 98  Q
    |||| ||||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  28148235 atatataagaatcatttactgatctgtaattgtaagagttgaatagggagcttata 28148180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 32799198 - 32799247
Alignment:
Q  23 cagttgtgacttgcaatatcatatctaagaatcatttattaatctctaat 72  Q
    ||||||||||||||||||||||||||||||||||||  || |||||||||    
T  32799198 cagttgtgacttgcaatatcatatctaagaatcattccttgatctctaat 32799247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 28222366 - 28222316
Alignment:
Q  255 acatggccaaaactaccctcaaatgtgtatgagaaacttacataggaagag 305  Q
    ||||||| ||||||||| |||||||||| | ||||||||||||||||||||    
T  28222366 acatggctaaaactaccatcaaatgtgtgtaagaaacttacataggaagag 28222316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 28179413 - 28179344
Alignment:
Q  64 atctctaattgtaagagttgaatagggagcttatacaaaaatatacttcaataccttggaatccaagttt 133  Q
    |||| |||||||||||||||||||||||||| |||  |||||| ||||  |||||||  |||||||||||    
T  28179413 atctgtaattgtaagagttgaatagggagctgataagaaaatacactttgataccttcaaatccaagttt 28179344  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 28211804 - 28211836
Alignment:
Q  101 aaaatatacttcaataccttggaatccaagttt 133  Q
    |||||| ||||||||||||||||||||||||||    
T  28211804 aaaatacacttcaataccttggaatccaagttt 28211836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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