View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17737_low_37 (Length: 292)

Name: NF17737_low_37
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17737_low_37
NF17737_low_37
[»] chr8 (13 HSPs)
chr8 (50-286)||(33538950-33539184)
chr8 (8-211)||(33535642-33535845)
chr8 (213-287)||(1921711-1921783)
chr8 (220-285)||(8717476-8717538)
chr8 (246-287)||(12748923-12748963)
chr8 (243-292)||(18533688-18533736)
chr8 (220-292)||(19163530-19163599)
chr8 (243-288)||(22975821-22975866)
chr8 (246-287)||(32051531-32051571)
chr8 (243-287)||(444432-444475)
chr8 (243-287)||(27587240-27587283)
chr8 (248-288)||(33105415-33105454)
chr8 (213-292)||(37938486-37938562)
[»] chr5 (6 HSPs)
chr5 (207-287)||(22522800-22522877)
chr5 (214-287)||(4009858-4009929)
chr5 (209-286)||(37932317-37932391)
chr5 (243-285)||(31280038-31280079)
chr5 (246-287)||(40715948-40715988)
chr5 (243-287)||(5846048-5846091)
[»] chr2 (15 HSPs)
chr2 (217-288)||(25186240-25186308)
chr2 (243-292)||(35456814-35456863)
chr2 (246-292)||(20565069-20565114)
chr2 (245-292)||(28550478-28550525)
chr2 (222-292)||(29734691-29734758)
chr2 (257-292)||(31543044-31543079)
chr2 (222-287)||(12413493-12413555)
chr2 (222-287)||(12425553-12425615)
chr2 (246-292)||(31815881-31815926)
chr2 (221-285)||(12124544-12124605)
chr2 (215-283)||(22571868-22571933)
chr2 (246-287)||(29544649-29544689)
chr2 (246-287)||(42791317-42791357)
chr2 (223-287)||(43043164-43043225)
chr2 (220-288)||(43117188-43117253)
[»] chr7 (13 HSPs)
chr7 (215-285)||(39926539-39926606)
chr7 (243-292)||(145536-145585)
chr7 (243-287)||(18714467-18714510)
chr7 (212-287)||(27462435-27462507)
chr7 (220-286)||(10244725-10244788)
chr7 (247-286)||(19050419-19050458)
chr7 (222-292)||(19599145-19599212)
chr7 (214-287)||(19416506-19416576)
chr7 (247-289)||(20085756-20085797)
chr7 (215-292)||(47677571-47677645)
chr7 (243-292)||(27833395-27833443)
chr7 (211-287)||(23147276-23147352)
chr7 (243-287)||(46987105-46987148)
[»] chr3 (11 HSPs)
chr3 (220-292)||(39779022-39779091)
chr3 (217-284)||(26941694-26941759)
chr3 (213-287)||(52904142-52904213)
chr3 (213-287)||(54113331-54113403)
chr3 (246-292)||(34899119-34899164)
chr3 (246-287)||(38130958-38130998)
chr3 (243-283)||(12043099-12043139)
chr3 (220-287)||(25340923-25340987)
chr3 (246-286)||(41817521-41817560)
chr3 (246-286)||(45431970-45432009)
chr3 (247-287)||(48849762-48849801)
[»] chr6 (11 HSPs)
chr6 (213-285)||(33824872-33824941)
chr6 (243-283)||(3863336-3863376)
chr6 (242-292)||(5267041-5267091)
chr6 (246-292)||(32524414-32524459)
chr6 (243-288)||(404182-404226)
chr6 (246-287)||(8569731-8569771)
chr6 (220-292)||(20744136-20744205)
chr6 (213-292)||(8138452-8138528)
chr6 (243-287)||(8917618-8917662)
chr6 (225-292)||(16204784-16204848)
chr6 (248-292)||(34481408-34481451)
[»] chr4 (19 HSPs)
chr4 (243-284)||(19731131-19731172)
chr4 (214-285)||(7230272-7230340)
chr4 (220-287)||(14577506-14577570)
chr4 (220-287)||(54857614-54857678)
chr4 (222-288)||(20383488-20383551)
chr4 (222-288)||(28435246-28435309)
chr4 (246-288)||(675940-675981)
chr4 (216-285)||(5924643-5924709)
chr4 (246-292)||(11949757-11949802)
chr4 (220-292)||(9946425-9946494)
chr4 (246-287)||(42139866-42139906)
chr4 (243-288)||(49473664-49473708)
chr4 (248-292)||(19479471-19479514)
chr4 (246-286)||(20799394-20799433)
chr4 (220-287)||(32139337-32139402)
chr4 (243-287)||(37921765-37921808)
chr4 (215-286)||(43722758-43722826)
chr4 (247-287)||(49041980-49042019)
chr4 (243-287)||(56551591-56551634)
[»] scaffold0005 (1 HSPs)
scaffold0005 (220-287)||(239805-239869)
[»] chr1 (12 HSPs)
chr1 (222-285)||(34521191-34521251)
chr1 (248-287)||(6423760-6423799)
chr1 (252-287)||(19795115-19795150)
chr1 (243-288)||(3937520-3937566)
chr1 (220-285)||(26755614-26755676)
chr1 (243-292)||(8269362-8269410)
chr1 (247-292)||(18166625-18166669)
chr1 (246-287)||(25532995-25533035)
chr1 (246-287)||(26803450-26803490)
chr1 (220-292)||(29233968-29234037)
chr1 (248-292)||(12268978-12269021)
chr1 (220-283)||(44641525-44641585)
[»] scaffold1127 (1 HSPs)
scaffold1127 (248-288)||(1163-1202)


Alignment Details
Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 50 - 286
Target Start/End: Complemental strand, 33539184 - 33538950
Alignment:
Q  50 attccatccaacaaatnnnnnnnttaacgactccggtcatttgttcaccatttcaatattttaacggaagcagacaattgataataactaaacagctgct 149  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33539184 attccatccaacaaataaaaaaattaacgactccggtcatttgttcaccatttcaatattttaacggaagcagacaattgataataactaaacagctgct 33539085  T
Q  150 tcaatttgagtgacaaattaaaagttttacacttacaatctataacatagatagttctttttgtttgtcatcgtgagtttagctcggttgctataaggac 249  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||| |||||| ||  ||||   ||||||     
T  33539084 tcaatttgagtgacaaattaaaagctttacacttacaatctctaacatagatagttctttttgtttgtcctcgtaagtttaacttagttg--gtaaggat 33538987  T
Q  250 aatgcattaatatatgcaatgtccggggttcaaaccc 286  Q
    |||| |||||||||||||| ||  |||||||||||||    
T  33538986 aatgtattaatatatgcaaggtttggggttcaaaccc 33538950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 211
Target Start/End: Complemental strand, 33535845 - 33535642
Alignment:
Q  8 agattattctgctagtttacctaagaaaatttagtgttaacaattccatccaacaaatnnnnnnnttaacgactccggtcatttgttcaccatttcaata 107  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||       |||||||||| |||||||||| |||||| ||||||    
T  33535845 agattattctgctagtttacctaagaaaatttagtgataacaattccatccaacaaataaaaaaattaacgactctggtcatttgtccaccatatcaata 33535746  T
Q  108 ttttaacggaagcagacaattgataataactaaacagctgcttcaatttgagtgacaaattaaaagttttacacttacaatctataacatagatagttct 207  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||| |||| ||||||||| |    
T  33535745 ttttaacggaagtagaaaattgataataactaaacagctgcttcaatttgagtgacaaattaaaagctttacgtttacaatctctaacttagatagtttt 33535646  T
Q  208 tttt 211  Q
    ||||    
T  33535645 tttt 33535642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 287
Target Start/End: Original strand, 1921711 - 1921783
Alignment:
Q  213 tttgtcatcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    |||||| ||||||||||||||  ||||  |||  |||||||||| ||||||||||| ||||||||||| ||||||    
T  1921711 tttgtcttcgtgagtttagctaagttg--atagcgacaatgcataaatatatgcaaggtccggggttcgaacccc 1921783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 8717538 - 8717476
Alignment:
Q  220 tcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacc 285  Q
    ||||||||||||||| |||| |||  ||||||||||| ||||||||||| || |||||||||||||    
T  8717538 tcgtgagtttagctcagttggtat--ggacaatgcat-aatatatgcaaggttcggggttcaaacc 8717476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 12748923 - 12748963
Alignment:
Q  246 ggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  12748923 ggacaatgcat-aatatatgcaaggtccggggttcaaacccc 12748963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 18533688 - 18533736
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    |||| ||||||||| |||||||||||  ||||||||||||||||||||||    
T  18533688 taagaacaatgcat-aatatatgcaagatccggggttcaaaccccaacca 18533736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 19163599 - 19163530
Alignment:
Q  220 tcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    ||||||| ||||||| |||| |||  ||||||||||| ||| ||||||| |||||||||||||||||| ||||    
T  19163599 tcgtgagcttagctcagttggtat--ggacaatgcat-aatttatgcaaggtccggggttcaaaccccgacca 19163530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 22975821 - 22975866
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaacccca 288  Q
    |||||||||||||| ||||||||||| ||| |||||| ||||||||    
T  22975821 taaggacaatgcataaatatatgcaaggtctggggtttaaacccca 22975866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 32051571 - 32051531
Alignment:
Q  246 ggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  32051571 ggacaatgcat-aatatatgcaaggtccggggttcaaacccc 32051531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 444432 - 444475
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    |||||||||||||| ||||||||||| |||||||||| |||||||    
T  444432 taaggacaatgcat-aatatatgcaaggtccggggtttaaacccc 444475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 27587240 - 27587283
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    |||||||||||||| | ||||||||| ||||||||||||||||||    
T  27587240 taaggacaatgcatga-tatatgcaaggtccggggttcaaacccc 27587283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 33105415 - 33105454
Alignment:
Q  248 acaatgcattaatatatgcaatgtccggggttcaaacccca 288  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  33105415 acaatgcat-aatatatgcaaggtccggggttcaaacccca 33105454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 37938486 - 37938562
Alignment:
Q  213 tttgtcatcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    |||||| ||||||||||||||| |||| |||  ||| ||||||| ||||||||||| ||||| |||||||| ||| ||||    
T  37938486 tttgtcctcgtgagtttagctcagttggtat--ggataatgcat-aatatatgcaaagtccgaggttcaaatcccgacca 37938562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 207 - 287
Target Start/End: Complemental strand, 22522877 - 22522800
Alignment:
Q  207 tttttgtttgtcatcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||| |||||| ||||||| |||||||||||| |||  ||||||||||| ||||||||||| ||||||||||||||||||    
T  22522877 tttttttttgtcctcgtgagcttagctcggttggtat--ggacaatgcat-aatatatgcaaggtccggggttcaaacccc 22522800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 4009858 - 4009929
Alignment:
Q  214 ttgtcatcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||| ||||||| ||||||| |||| ||  |||||||||||||||||||||||| | ||||||||||||||||    
T  4009858 ttgtcctcgtgagcttagctcagttggta--aggacaatgcattaatatatgcaagggccggggttcaaacccc 4009929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 286
Target Start/End: Original strand, 37932317 - 37932391
Alignment:
Q  209 tttgtttgtcatcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaaccc 286  Q
    |||||||||| ||||||| ||||||| |||| |||  ||||||||||| ||||||||||| ||||||||||| |||||    
T  37932317 tttgtttgtcctcgtgagcttagctcagttggtat--ggacaatgcat-aatatatgcaaggtccggggttcgaaccc 37932391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 31280038 - 31280079
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaacc 285  Q
    |||||||||||||| |||||||||||| |||||||||||||||    
T  31280038 taaggacaatgcat-aatatatgcaatatccggggttcaaacc 31280079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 40715988 - 40715948
Alignment:
Q  246 ggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  40715988 ggacaatgcat-aatatatgcaaggtccggggttcaaacccc 40715948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 5846048 - 5846091
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    |||||||||||||| ||||||||||| ||| ||||||||||||||    
T  5846048 taaggacaatgcat-aatatatgcaaagtctggggttcaaacccc 5846091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 25186308 - 25186240
Alignment:
Q  217 tcatcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacccca 288  Q
    |||||||||||||||||| |||| |||  ||||||||||| ||||||||||| |||||||||||||||||||    
T  25186308 tcatcgtgagtttagctcagttgatat--ggacaatgcat-aatatatgcaaggtccggggttcaaacccca 25186240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 35456863 - 35456814
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    |||| ||||||||||||||||||||| || ||||||||||||||||||||    
T  35456863 taagaacaatgcattaatatatgcaaggttcggggttcaaaccccaacca 35456814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 20565114 - 20565069
Alignment:
Q  246 ggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  20565114 ggacaatgcat-aatatatgcaaggtccggggttcaaaccccaacca 20565069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 28550525 - 28550478
Alignment:
Q  245 aggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    |||||||||||| || |||||||| ||||||| |||||||||||||||    
T  28550525 aggacaatgcataaaaatatgcaaggtccgggattcaaaccccaacca 28550478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 29734691 - 29734758
Alignment:
Q  222 gtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    ||||||||||||| |||| |||  ||||||||||| ||||||||||| ||||| |||||||||||| ||||    
T  29734691 gtgagtttagctcagttgatat--ggacaatgcat-aatatatgcaaggtccgtggttcaaaccccgacca 29734758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 31543044 - 31543079
Alignment:
Q  257 taatatatgcaatgtccggggttcaaaccccaacca 292  Q
    |||||||||||| |||||||||||||||||||||||    
T  31543044 taatatatgcaaggtccggggttcaaaccccaacca 31543079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 12413493 - 12413555
Alignment:
Q  222 gtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||||||| ||||||||  ||||||||||||||| ||||||||||| ||| | ||||||||||||    
T  12413493 gtgagtttatctcggttg--ataaggacaatgcat-aatatatgcaaggtctgaggttcaaacccc 12413555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 12425553 - 12425615
Alignment:
Q  222 gtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||||||| ||||||||  ||||||||||||||| ||||||||||| ||| | ||||||||||||    
T  12425553 gtgagtttatctcggttg--ataaggacaatgcat-aatatatgcaaggtctgaggttcaaacccc 12425615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 31815926 - 31815881
Alignment:
Q  246 ggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    ||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  31815926 ggacaatgcat-aatatatgcaaggtccggggttcaaaccccgacca 31815881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 12124544 - 12124605
Alignment:
Q  221 cgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacc 285  Q
    |||||||||||||| |||| ||  |||||||||||| ||||||||||| ||||||||||| ||||    
T  12124544 cgtgagtttagctcagttggta--aggacaatgcat-aatatatgcaaggtccggggttcgaacc 12124605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 22571933 - 22571868
Alignment:
Q  215 tgtcatcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaa 283  Q
    |||| ||||||  ||||||| |||| ||||  |||||||||| ||||||||||||||||||||||||||    
T  22571933 tgtcctcgtgaacttagctcagttgatata--gacaatgcat-aatatatgcaatgtccggggttcaaa 22571868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 29544649 - 29544689
Alignment:
Q  246 ggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  29544649 ggacaatgcat-aatatatgcaaggtccggggttcaaacccc 29544689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 42791317 - 42791357
Alignment:
Q  246 ggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  42791317 ggacaatgcat-aatatatgcaaggtccggggttcaaacccc 42791357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 43043225 - 43043164
Alignment:
Q  223 tgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    |||| |||||||||||| ||||  |||||||||| ||| ||||||| ||||||||||||||||||    
T  43043225 tgagcttagctcggttggtata--gacaatgcat-aatgtatgcaaggtccggggttcaaacccc 43043164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 43117253 - 43117188
Alignment:
Q  220 tcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacccca 288  Q
    ||||||||||||||| |||| ||  |||||||||||| ||||||||||| ||| | |||||||||||||    
T  43117253 tcgtgagtttagctcagttggta--aggacaatgcat-aatatatgcaaggtctgaggttcaaacccca 43117188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 39926606 - 39926539
Alignment:
Q  215 tgtcatcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacc 285  Q
    |||||||||||| ||||||| ||||  ||||||||||||||| |||||||||||||| |||||||||||||    
T  39926606 tgtcatcgtgagcttagctcagttg--ataaggacaatgcat-aatatatgcaatgttcggggttcaaacc 39926539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 145536 - 145585
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    |||||||||  ||||||||||||||| |||||||||||||||||| ||||    
T  145536 taaggacaacacattaatatatgcaaggtccggggttcaaaccccgacca 145585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 18714467 - 18714510
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||    
T  18714467 taaggacaatgcat-aatatatgcaaggtccggggttcaaacccc 18714510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 287
Target Start/End: Complemental strand, 27462507 - 27462435
Alignment:
Q  212 gtttgtcatcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||||| |||||||  |||||| |||| |||  ||||||||||| ||||||||||| ||||||||||||||||||    
T  27462507 gtttgtcctcgtgagcatagctcagttggtat--ggacaatgcat-aatatatgcaaggtccggggttcaaacccc 27462435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 10244725 - 10244788
Alignment:
Q  220 tcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaaccc 286  Q
    ||||||| ||||||| |||| |||  ||||||||||| ||||||||||| |||||||||||||||||    
T  10244725 tcgtgagcttagctcagttggtat--ggacaatgcat-aatatatgcaaggtccggggttcaaaccc 10244788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 19050458 - 19050419
Alignment:
Q  247 gacaatgcattaatatatgcaatgtccggggttcaaaccc 286  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  19050458 gacaatgcataaatatatgcaaagtccggggttcaaaccc 19050419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 19599145 - 19599212
Alignment:
Q  222 gtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    ||||||||| ||| |||| |||  ||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  19599145 gtgagtttaactcagttggtat--ggacaatgcat-aatatatgcaaggtccggggttcaaaccccgacca 19599212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 19416506 - 19416576
Alignment:
Q  214 ttgtcatcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||| ||||||| ||||||| |||| |||  ||||||||||| || |||||||| ||||||||||||||||||    
T  19416506 ttgtcctcgtgagcttagctcagttggtat--ggacaatgcataaa-atatgcaaggtccggggttcaaacccc 19416576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 20085797 - 20085756
Alignment:
Q  247 gacaatgcattaatatatgcaatgtccggggttcaaaccccaa 289  Q
    |||||||||| ||||||||||| ||||||||||||||||||||    
T  20085797 gacaatgcat-aatatatgcaaggtccggggttcaaaccccaa 20085756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 292
Target Start/End: Complemental strand, 47677645 - 47677571
Alignment:
Q  215 tgtcatcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    |||| ||||||||||||||| |||| |   || ||||||||| || ||||||||||| ||||||||||||||||||||    
T  47677645 tgtcctcgtgagtttagctcagttggtt--agaacaatgcataaa-atatgcaatgttcggggttcaaaccccaacca 47677571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 27833443 - 27833395
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    |||||||||||||| |||||||| || |||||||||||||||||| ||||    
T  27833443 taaggacaatgcat-aatatatgtaaggtccggggttcaaaccccgacca 27833395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 23147276 - 23147352
Alignment:
Q  211 tgtttgtcatcgtgagtttagctcggttgctataaggacaatgcat--taatatatgcaatgtccggggttcaaacccc 287  Q
    |||||||| ||||||||||| ||| |||| ||   ||||||| |||  |||||||||||| ||||||||||||||||||    
T  23147276 tgtttgtcttcgtgagtttacctcagttggtag--ggacaatacataataatatatgcaaggtccggggttcaaacccc 23147352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 46987105 - 46987148
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||    
T  46987105 taaggacaatgcat-aatatatgcaaggtccggggttcgaacccc 46987148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 39779022 - 39779091
Alignment:
Q  220 tcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    |||||||| ||||||||||| |||  ||||||||||| ||||||||||| || ||||||||||||||||||||    
T  39779022 tcgtgagtatagctcggttggtat--ggacaatgcat-aatatatgcaaggttcggggttcaaaccccaacca 39779091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 26941694 - 26941759
Alignment:
Q  217 tcatcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaac 284  Q
    |||||||||||||| ||| |||||||  || ||||||||||||||||||||| || ||||||||||||    
T  26941694 tcatcgtgagtttatctcagttgcta--agcacaatgcattaatatatgcaaggttcggggttcaaac 26941759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 287
Target Start/End: Complemental strand, 52904213 - 52904142
Alignment:
Q  213 tttgtcatcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    |||||| ||||||| ||||||| |||| ||  |||||||||||| ||||||||||||||| ||||||||||||||    
T  52904213 tttgtcctcgtgaggttagctcagttggta--aggacaatgcat-aatatatgcaatgtcgggggttcaaacccc 52904142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 287
Target Start/End: Original strand, 54113331 - 54113403
Alignment:
Q  213 tttgtcatcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    |||||||||||||| ||||||| |||| ||||  |||||||||| ||| ||||||| |||| |||||| ||||||    
T  54113331 tttgtcatcgtgagcttagctcagttgatata--gacaatgcataaatgtatgcaaggtcccgggttcgaacccc 54113403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 34899119 - 34899164
Alignment:
Q  246 ggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    ||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  34899119 ggacaatgcat-aatatatgcaaggtccggggttcaaaccccgacca 34899164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 38130998 - 38130958
Alignment:
Q  246 ggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  38130998 ggacaatgcat-aatatatgcaaggtccggggttcaaacccc 38130958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 12043139 - 12043099
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaa 283  Q
    |||||||||||||||||||||||||| || || ||||||||    
T  12043139 taaggacaatgcattaatatatgcaaggttcgaggttcaaa 12043099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 25340987 - 25340923
Alignment:
Q  220 tcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||||| ||||||| |||| |||  ||||||||||| || |||||||| ||||||||||||||||||    
T  25340987 tcgtgagcttagctcagttggtat--ggacaatgcataaa-atatgcaaggtccggggttcaaacccc 25340923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 41817521 - 41817560
Alignment:
Q  246 ggacaatgcattaatatatgcaatgtccggggttcaaaccc 286  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  41817521 ggacaatgcat-aatatatgcaaggtccggggttcaaaccc 41817560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 45431970 - 45432009
Alignment:
Q  246 ggacaatgcattaatatatgcaatgtccggggttcaaaccc 286  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  45431970 ggacaatgcat-aatatatgcaaggtccggggttcaaaccc 45432009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 48849801 - 48849762
Alignment:
Q  247 gacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  48849801 gacaatgcat-aatatatgcaaggtccggggttcaaacccc 48849762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 33824872 - 33824941
Alignment:
Q  213 tttgtcatcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacc 285  Q
    |||||| ||||||  ||||||| ||||  ||||||||||||||| ||||||||||| ||||||||||||||||    
T  33824872 tttgtcttcgtgatcttagctcagttg--ataaggacaatgcat-aatatatgcaaggtccggggttcaaacc 33824941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 3863376 - 3863336
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaa 283  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  3863376 taaggacaatgcattaatatatgcaacgtctggggttcaaa 3863336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Original strand, 5267041 - 5267091
Alignment:
Q  242 ataaggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    ||||||| ||||||||||||||||||| ||||||  |||||||||| ||||    
T  5267041 ataaggataatgcattaatatatgcaaggtccggaattcaaaccccgacca 5267091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 32524459 - 32524414
Alignment:
Q  246 ggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||||    
T  32524459 ggacaatgcat-aatatatgcaaagtccagggttcaaaccccaacca 32524414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 404182 - 404226
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaacccca 288  Q
    |||||||||||||| ||||||||||||||||| ||||| |||||||    
T  404182 taaggacaatgcat-aatatatgcaatgtccgaggttcgaacccca 404226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 8569731 - 8569771
Alignment:
Q  246 ggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  8569731 ggacaatgcat-aatatatgcaaggtccggggttcaaacccc 8569771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 20744136 - 20744205
Alignment:
Q  220 tcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    ||||||| ||||||| |||| |||  ||||||||||| ||||||||||| ||| |||||||||||||| ||||    
T  20744136 tcgtgagcttagctcagttggtat--ggacaatgcat-aatatatgcaaggtctggggttcaaaccccgacca 20744205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 8138528 - 8138452
Alignment:
Q  213 tttgtcatcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    |||||| |||||| |||||||| ||||  ||||| ||||||||| |||||||| || ||| |||||||||||| ||||||    
T  8138528 tttgtcctcgtgaatttagctcagttg--ataagaacaatgcat-aatatatgtaaggtctggggttcaaacctcaacca 8138452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 8917618 - 8917662
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    |||||||||| |||||||||||| || ||| ||||||||||||||    
T  8917618 taaggacaatacattaatatatgtaaggtctggggttcaaacccc 8917662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 292
Target Start/End: Complemental strand, 16204848 - 16204784
Alignment:
Q  225 agtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    ||||||||||||||| |||  ||||||||||| ||| ||||||| |||||||||||||| ||| ||||    
T  16204848 agtttagctcggttgatat--ggacaatgcat-aatgtatgcaaggtccggggttcaaatcccgacca 16204784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 34481451 - 34481408
Alignment:
Q  248 acaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    ||||||||||| ||||||||| |||||||||||||||||| ||||    
T  34481451 acaatgcatta-tatatgcaaggtccggggttcaaaccccgacca 34481408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 19731172 - 19731131
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaac 284  Q
    |||||||||||||||||||||||||| || ||||||||||||    
T  19731172 taaggacaatgcattaatatatgcaaggttcggggttcaaac 19731131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 7230272 - 7230340
Alignment:
Q  214 ttgtcatcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacc 285  Q
    ||||| ||||||| ||||||| |||| ||  |||||||||||| ||||||||||| ||||||||||||||||    
T  7230272 ttgtcctcgtgagcttagctcagttggta--aggacaatgcat-aatatatgcaaggtccggggttcaaacc 7230340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 14577570 - 14577506
Alignment:
Q  220 tcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||||||||||||| |||| ||  |||||||||||| ||||||||||| |||||| |||||||||||    
T  14577570 tcgtgagtttagctcagttggta--aggacaatgcat-aatatatgcaaagtccggagttcaaacccc 14577506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 54857678 - 54857614
Alignment:
Q  220 tcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||||| |||||||||||| |||||  ||||||||| || |||||||| ||||||||||||||||||    
T  54857678 tcgtgagcttagctcggttggtataa--acaatgcataaa-atatgcaaggtccggggttcaaacccc 54857614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 20383488 - 20383551
Alignment:
Q  222 gtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacccca 288  Q
    ||||| ||||||| |||| |||  ||||||||||| ||||||||||| |||||||||||||||||||    
T  20383488 gtgagcttagctcagttggtat--ggacaatgcat-aatatatgcaaggtccggggttcaaacccca 20383551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 28435309 - 28435246
Alignment:
Q  222 gtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacccca 288  Q
    ||||||||||||| |||| |||  ||||||||||| ||||||||||| || ||||||||||||||||    
T  28435309 gtgagtttagctcagttggtat--ggacaatgcat-aatatatgcaaggttcggggttcaaacccca 28435246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 675940 - 675981
Alignment:
Q  246 ggacaatgcattaatatatgcaatgtccggggttcaaacccca 288  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  675940 ggacaatgcat-aatatatgcaaggtccggggttcaaacccca 675981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 5924643 - 5924709
Alignment:
Q  216 gtcatcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacc 285  Q
    ||||||||||| ||||||| ||||||||  ||||||| ||| |||||||| || ||||||||||||||||    
T  5924643 gtcatcgtgagcttagctcagttgctat--ggacaatacat-aatatatggaaggtccggggttcaaacc 5924709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 11949802 - 11949757
Alignment:
Q  246 ggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    ||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  11949802 ggacaatgcat-aatatatgcaaggtccggggttcaaaccccgacca 11949757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 9946425 - 9946494
Alignment:
Q  220 tcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    ||||||| ||||||| |||| |||  ||||||||||| || |||||||| |||||||||||||||||| ||||    
T  9946425 tcgtgagcttagctcagttggtat--ggacaatgcataaa-atatgcaaggtccggggttcaaaccccgacca 9946494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 42139866 - 42139906
Alignment:
Q  246 ggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  42139866 ggacaatgcat-aatacatgcaatgtccggggttcaaacccc 42139906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 49473664 - 49473708
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaacccca 288  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||||    
T  49473664 taaggacaatgcat-aatatatgcaaggtccggggttcgaacccca 49473708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 19479514 - 19479471
Alignment:
Q  248 acaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    ||||||||| ||||||||||| |||||||||||||||||| ||||    
T  19479514 acaatgcat-aatatatgcaaggtccggggttcaaaccccgacca 19479471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 20799433 - 20799394
Alignment:
Q  246 ggacaatgcattaatatatgcaatgtccggggttcaaaccc 286  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  20799433 ggacaatgcat-aatatatgcaaggtccggggttcaaaccc 20799394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 32139337 - 32139402
Alignment:
Q  220 tcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||||| ||||||| ||||  ||| ||||||| ||| ||||||||||| ||||||||||| ||||||    
T  32139337 tcgtgagcttagctcagttg--atagggacaatacataaatatatgcaaggtccggggttcgaacccc 32139402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 37921765 - 37921808
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    |||||||||||||| ||||||||||| ||||||| ||||||||||    
T  37921765 taaggacaatgcat-aatatatgcaaggtccgggattcaaacccc 37921808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 43722758 - 43722826
Alignment:
Q  215 tgtcatcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaaccc 286  Q
    |||| ||||||||||| ||| |||| |||  ||||||||||| |||||||| || |||||||||||||||||    
T  43722758 tgtcctcgtgagtttaactcagttggtat--ggacaatgcat-aatatatgtaaggtccggggttcaaaccc 43722826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 49042019 - 49041980
Alignment:
Q  247 gacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  49042019 gacaatgcat-aatatatgcaaggtccggggttcaaacccc 49041980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 56551634 - 56551591
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||    
T  56551634 taaggacaatgcat-aatatatgcaaggtccgaggttcaaacccc 56551591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 239805 - 239869
Alignment:
Q  220 tcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||||||||||||| |||| ||  |||||||||||| ||||||||||| |||||| |||||||||||    
T  239805 tcgtgagtttagctcagttggta--aggacaatgcat-aatatatgcaaagtccggagttcaaacccc 239869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 34521251 - 34521191
Alignment:
Q  222 gtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacc 285  Q
    ||||||||||||| |||| |||  ||||||||||| ||||||||||| ||||||||||||||||    
T  34521251 gtgagtttagctcagttggtat--ggacaatgcat-aatatatgcaaggtccggggttcaaacc 34521191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 6423799 - 6423760
Alignment:
Q  248 acaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  6423799 acaatgcatttatatatgcaaggtccggggttcaaacccc 6423760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 252 - 287
Target Start/End: Complemental strand, 19795150 - 19795115
Alignment:
Q  252 tgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||||||||||||||| ||||||||||||||||||    
T  19795150 tgcattaatatatgcaaggtccggggttcaaacccc 19795115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 3937566 - 3937520
Alignment:
Q  243 taaggacaatgcat-taatatatgcaatgtccggggttcaaacccca 288  Q
    |||||||||||||  |||||||||||| |||||||||||||||||||    
T  3937566 taaggacaatgcacataatatatgcaaggtccggggttcaaacccca 3937520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 26755614 - 26755676
Alignment:
Q  220 tcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaacc 285  Q
    ||||||| ||||||| |||| |||  ||||||||||||| ||||||||| ||||||||||||||||    
T  26755614 tcgtgagcttagctcagttgatat--ggacaatgcatta-tatatgcaaggtccggggttcaaacc 26755676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 8269410 - 8269362
Alignment:
Q  243 taaggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    |||||||||| ||| ||||||||||| |||||||||||||||||| ||||    
T  8269410 taaggacaatacat-aatatatgcaaggtccggggttcaaaccccgacca 8269362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 18166625 - 18166669
Alignment:
Q  247 gacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    |||||||||| ||||||||||| |||||||||||||||||| ||||    
T  18166625 gacaatgcat-aatatatgcaaagtccggggttcaaaccccgacca 18166669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 25532995 - 25533035
Alignment:
Q  246 ggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  25532995 ggacaatgcat-aatatatgcaaggtccggggttcaaacccc 25533035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 26803490 - 26803450
Alignment:
Q  246 ggacaatgcattaatatatgcaatgtccggggttcaaacccc 287  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  26803490 ggacaatgcat-aatatatgcaaagtccggggttcaaacccc 26803450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 29234037 - 29233968
Alignment:
Q  220 tcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    ||||||||||||||| |||| ||||  |||||||||| || |||||||| ||| ||||||| |||||||||||    
T  29234037 tcgtgagtttagctcagttggtata--gacaatgcataaa-atatgcaaggtctggggttcgaaccccaacca 29233968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 12269021 - 12268978
Alignment:
Q  248 acaatgcattaatatatgcaatgtccggggttcaaaccccaacca 292  Q
    ||||||||| ||||||||||| |||||||||||||||||| ||||    
T  12269021 acaatgcat-aatatatgcaaggtccggggttcaaaccccgacca 12268978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 283
Target Start/End: Original strand, 44641525 - 44641585
Alignment:
Q  220 tcgtgagtttagctcggttgctataaggacaatgcattaatatatgcaatgtccggggttcaaa 283  Q
    ||||||||||||||| |||| |||  ||||||||||| ||||||||||| | ||||||||||||    
T  44641525 tcgtgagtttagctcagttgatat--ggacaatgcat-aatatatgcaaggcccggggttcaaa 44641585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1127 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1127
Description:

Target: scaffold1127; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 1202 - 1163
Alignment:
Q  248 acaatgcattaatatatgcaatgtccggggttcaaacccca 288  Q
    ||||||||| ||||||||||| |||||||||||||||||||    
T  1202 acaatgcat-aatatatgcaaggtccggggttcaaacccca 1163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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