View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17737_low_4 (Length: 658)
Name: NF17737_low_4
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 610; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 12 - 641
Target Start/End: Original strand, 54791084 - 54791713
Alignment:
| Q |
12 |
aagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaata |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
54791084 |
aagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagaccgacctagtaaatgaagcagaccaaata |
54791183 |
T |
|
| Q |
112 |
cctcccccggctttggccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaact |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54791184 |
cctcccccggctttggccgaagctgtcaaccaacctgtaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaact |
54791283 |
T |
|
| Q |
212 |
ttaacgatgctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagactt |
311 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
54791284 |
ttaacgattctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagactt |
54791383 |
T |
|
| Q |
312 |
caacaatgactggaatggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcag |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54791384 |
caacaatgactggaatggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcag |
54791483 |
T |
|
| Q |
412 |
gccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaacaa |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54791484 |
gccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaacag |
54791583 |
T |
|
| Q |
512 |
tttcagatattgttcaagaagcatctgaaagcagaaatagcattgtggaaaacctggccaatgaaattgacattacaaatgaaaacctcaacaaaatgca |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54791584 |
tttcagatattgttcaagaagcatctgaaagcagaaatagcattgtggaaaacctggccaatgaaattgacattacaaatgaaaacctcaacaaaatgca |
54791683 |
T |
|
| Q |
612 |
gtataagtataatgagaagaccatgtcctt |
641 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
54791684 |
gtataagtataatgagaagaccatgtcctt |
54791713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 12 - 638
Target Start/End: Original strand, 52283742 - 52284368
Alignment:
| Q |
12 |
aagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaata |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
52283742 |
aagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtttttggagactgacctagcaaatgaagcagaccaaata |
52283841 |
T |
|
| Q |
112 |
cctcccccggctttggccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaact |
211 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
52283842 |
cctcccccgcctttgaccgaagctgtcaaccaacctgcaccacaggttgagaactatgtctggccatggacaggcataattgttaatattaagagcaaac |
52283941 |
T |
|
| Q |
212 |
ttaacgatgctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagactt |
311 |
Q |
| |
|
| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
52283942 |
tgaatgattctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagactt |
52284041 |
T |
|
| Q |
312 |
caacaatgactggaatggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcag |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52284042 |
caacaatgactggaatggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcag |
52284141 |
T |
|
| Q |
412 |
gccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaacaa |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52284142 |
gccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaacaa |
52284241 |
T |
|
| Q |
512 |
tttcagatattgttcaagaagcatctgaaagcagaaatagcattgtggaaaacctggccaatgaaattgacattacaaatgaaaacctcaacaaaatgca |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
52284242 |
tttcagatattgttcaagaagcatctgaaagcagaaatagcattgtggaaaacctggctaatgaaattgatattacaaatgaaaacctcaacaaaatgca |
52284341 |
T |
|
| Q |
612 |
gtataagtataatgagaagaccatgtc |
638 |
Q |
| |
|
||||||||||| |||||||||||||| |
|
|
| T |
52284342 |
atataagtataacgagaagaccatgtc |
52284368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 12 - 641
Target Start/End: Complemental strand, 54778061 - 54777433
Alignment:
| Q |
12 |
aagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaata |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
54778061 |
aagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagaccgacctagtaaatgaagcagaccaaata |
54777962 |
T |
|
| Q |
112 |
cctcccccggctttggccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaact |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
54777961 |
cctcccccggctttggccgaagctgtcaaccaacctgtaccgcaggttgagaattatgt-tggccatggacaggtataatcgttaacattaagagcaacc |
54777863 |
T |
|
| Q |
212 |
ttaacgatgctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagactt |
311 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
54777862 |
ttaacgattctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagactt |
54777763 |
T |
|
| Q |
312 |
caacaatgactggaatggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcag |
411 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | |
|
|
| T |
54777762 |
caacaatgactggaatggtttcaagaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggaatggaattcaatggacatgctg |
54777663 |
T |
|
| Q |
412 |
gccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaacaa |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54777662 |
gccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccctcggaacaaaggaaggctgagaacaa |
54777563 |
T |
|
| Q |
512 |
tttcagatattgttcaagaagcatctgaaagcagaaatagcattgtggaaaacctggccaatgaaattgacattacaaatgaaaacctcaacaaaatgca |
611 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||| |||||||||||||||||| ||| | |
|
|
| T |
54777562 |
tttcggatattgttcaagaagcatctgaaagagaaaatagcaaacgggaaaacctgaccaatgaaattgacattccaaatgaaaacctcaacataattcg |
54777463 |
T |
|
| Q |
612 |
gtataagtataatgagaagaccatgtcctt |
641 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
54777462 |
gtataagtataatgagaagaccatgtcctt |
54777433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 643
Target Start/End: Original strand, 799020 - 799643
Alignment:
| Q |
14 |
gcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaatacc |
113 |
Q |
| |
|
|||||||||| |||||||||| | | || ||||| ||||||||||| ||||||||||||| |||| ||||||| ||| |||||||||||||||| |||| |
|
|
| T |
799020 |
gcaaaggttcggcaaacagaagcacaaagcaaaaagcaaaccacctggctctggcaaagtttttgaggactgacttagcaaatgaagcagaccaagtacc |
799119 |
T |
|
| Q |
114 |
tcccccggctttggccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaacttt |
213 |
Q |
| |
|
|| |||||||||| | | |||||| |||||||| | | |||||||| || || ||||| |||||||||||| | || ||||| | |||| | |
|
|
| T |
799120 |
tcgcccggctttgactgtagctgttgtccaacctgtcc---aagttgagaactacgtttggccgtggacaggcatacttgtcaacataa---gcaaatca |
799213 |
T |
|
| Q |
214 |
aacgatgctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagacttca |
313 |
Q |
| |
|
| ||| ||||||||| || |||||||||||| ||||||| ||| |||| ||| ||| ||||| ||||||||| || |||||| ||||||||| |
|
|
| T |
799214 |
catgattctggatacttgcaaaaggaatttgctaagtacaaaccgttggctgttcatacgttcttgatggatggtaactccgtggctgttatagacttca |
799313 |
T |
|
| Q |
314 |
acaatgactggaatggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggc |
413 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||||||| |||||| ||||||| || ||| || ||||| |||||||| | |||| |||||| |
|
|
| T |
799314 |
acaatgactggaatgggtttatgaatgcaagtgagcttgagaaatgctttgagactaaacgtcgtggaaaaaaggattggaattccatggacttgcagga |
799413 |
T |
|
| Q |
414 |
cagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaacaatt |
513 |
Q |
| |
|
||||||||| ||||| || |||||||||||||||||||||||||||||| |||| || |||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
799414 |
cagttcagagatttacggttgggttgcacgtgaagatgattataattgtccagggttgattggggagtaccttcgcaacaaaggaaggctgaggacaatt |
799513 |
T |
|
| Q |
514 |
tcagatattgttcaagaagcatctgaaagcagaaatagcattgtggaaaacctggccaatgaaattgacattacaaatgaaaacctcaacaaaatgcagt |
613 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||| ||||||| |
|
|
| T |
799514 |
tcagatatagttcaagaagcatctcaaagcagaaatagcattgtggaaaacctggcaaatgagattgatattactaatgaaaatctcaacaagatgcagt |
799613 |
T |
|
| Q |
614 |
ataagtataatgagaagaccatgtccttga |
643 |
Q |
| |
|
||| ||||||||||||||| |||||||||| |
|
|
| T |
799614 |
ataggtataatgagaagactatgtccttga |
799643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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