View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17737_low_44 (Length: 256)
Name: NF17737_low_44
Description: NF17737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17737_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 1459688 - 1459917
Alignment:
| Q |
11 |
cataggatatatcatatagttgaagatcttcaagaactggacatccctctagaagacaatcaagatctccatattgatgaaactcaatgactttcagatg |
110 |
Q |
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| T |
1459688 |
cataggatatatcatatagttgaagatcttcaagaactggacatccctctagaagacaatcaagatctccatattgttgaaactcaatgtctttcagatg |
1459787 |
T |
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| Q |
111 |
tagggttttgagtgagggtaatcttatgagataattacaaaatccagaacccataaaaagttcactgagcttaagaataacaagggtttcactagtaaag |
210 |
Q |
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| T |
1459788 |
tagggttttgagtgagggtaatcttatgagataattacaaaacccagaacccataaaaagttcactgagcttaagaataacaagggtttctctagtaaag |
1459887 |
T |
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| Q |
211 |
atagtattaggaacttcagggtatattctt |
240 |
Q |
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| T |
1459888 |
atagtattaggaaattcagggtatattctt |
1459917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 1446286 - 1446494
Alignment:
| Q |
12 |
ataggatatatcatatagttgaagatcttcaagaactggacatccctctagaagacaatcaagatctccatattgatgaaactcaatgactttcagatgt |
111 |
Q |
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| T |
1446286 |
ataggatatatgatatagttgaagatcttcaataactggacaataccctagaagacacttaagatctccatatcgatcaaacttaatgtctttcaaatgt |
1446385 |
T |
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| Q |
112 |
agggttttgagtgagggtaatcttatgagataattacaaaatccagaacccataaaaagttcactgagcttaagaataacaagggtttcactagtaaaga |
211 |
Q |
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| T |
1446386 |
agggttttgagtgaaggtaatattatgggataataacaaaatgccggacccatataaagataactgagcttaagaacaacaagggttgtacaagtaagaa |
1446485 |
T |
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| Q |
212 |
tagtattag |
220 |
Q |
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| T |
1446486 |
tagtattag |
1446494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 975118 - 975166
Alignment:
| Q |
17 |
atatatcatatagttgaagatcttcaagaactggacatccctctagaag |
65 |
Q |
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|||||| | ||||||||||||||||||||||||||||||| |||||||| |
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| T |
975118 |
atatataacatagttgaagatcttcaagaactggacatccatctagaag |
975166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 409710 - 409673
Alignment:
| Q |
28 |
agttgaagatcttcaagaactggacatccctctagaag |
65 |
Q |
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| T |
409710 |
agttgaagatcttgaagaactggacatccatctagaag |
409673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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